Results 1 - 20 of 525 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 15178 | 0.65 | 0.653455 |
Target: 5'- cGGCG-GCGGCGCccgcgggaaacgccGCCaucGCGCGGuCGu -3' miRNA: 3'- -CCGCuCGUCGCG--------------CGGgu-CGUGCCuGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 92934 | 0.79 | 0.104349 |
Target: 5'- cGGCgGAGCAGC-UGCCCGGCGuccCGGACAa -3' miRNA: 3'- -CCG-CUCGUCGcGCGGGUCGU---GCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 4503 | 0.79 | 0.109818 |
Target: 5'- cGCGGGCcccagucGCGCGCCC-GCGCGGGCGc -3' miRNA: 3'- cCGCUCGu------CGCGCGGGuCGUGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 117280 | 0.79 | 0.113805 |
Target: 5'- cGGCGAGCcuGGCGCcgagcccgcccucgaGCCCAGCcccggcGCGGGCAg -3' miRNA: 3'- -CCGCUCG--UCGCG---------------CGGGUCG------UGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 72754 | 0.78 | 0.115554 |
Target: 5'- uGGCGGGCcGCaUGCCCAGCACGG-CGg -3' miRNA: 3'- -CCGCUCGuCGcGCGGGUCGUGCCuGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 98201 | 0.78 | 0.12437 |
Target: 5'- cGGCGGGCAGCggGCGCCgccacggCAGCgcgGCGGGCAu -3' miRNA: 3'- -CCGCUCGUCG--CGCGG-------GUCG---UGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 86688 | 0.78 | 0.124685 |
Target: 5'- cGGCGAgGCGGCccacguacGCGCCCAGCGCGucCAg -3' miRNA: 3'- -CCGCU-CGUCG--------CGCGGGUCGUGCcuGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 128102 | 0.78 | 0.127552 |
Target: 5'- gGGCGAGCGGCGCggcgcggggucggGCCgAGUGCGGAgAg -3' miRNA: 3'- -CCGCUCGUCGCG-------------CGGgUCGUGCCUgU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 49214 | 0.78 | 0.127874 |
Target: 5'- gGGCGGGaGGCcgGCGCCCAGCGCGcGCAg -3' miRNA: 3'- -CCGCUCgUCG--CGCGGGUCGUGCcUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 33782 | 0.79 | 0.101712 |
Target: 5'- cGGCGAGCGcUGgGCCCcGCGCGGGCGg -3' miRNA: 3'- -CCGCUCGUcGCgCGGGuCGUGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 3874 | 0.79 | 0.100675 |
Target: 5'- cGGCGAGCacGGCGCGCagcucggcgagcgCGGCGCGGGCGc -3' miRNA: 3'- -CCGCUCG--UCGCGCGg------------GUCGUGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 70693 | 0.79 | 0.099138 |
Target: 5'- aGGCGucCAGCGCgGCCC-GCGCGGGCAc -3' miRNA: 3'- -CCGCucGUCGCG-CGGGuCGUGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 74755 | 0.85 | 0.042992 |
Target: 5'- uGGCGcGGCAGCGCGCCacaGGCGCGGAg- -3' miRNA: 3'- -CCGC-UCGUCGCGCGGg--UCGUGCCUgu -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 53721 | 0.83 | 0.058978 |
Target: 5'- cGGCcagcuGCGGCGCGCCC-GCACGGGCGa -3' miRNA: 3'- -CCGcu---CGUCGCGCGGGuCGUGCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 31434 | 0.82 | 0.070824 |
Target: 5'- aGGCGcuGGCGGCGcCGCCCGGCGaGGACGa -3' miRNA: 3'- -CCGC--UCGUCGC-GCGGGUCGUgCCUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 90397 | 0.81 | 0.072693 |
Target: 5'- cGGCgGGGCuG-GCGCCCGGCGCGGACu -3' miRNA: 3'- -CCG-CUCGuCgCGCGGGUCGUGCCUGu -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 67110 | 0.8 | 0.08494 |
Target: 5'- uGCGGGCGGCGCGCgCAGUGCGG-CGg -3' miRNA: 3'- cCGCUCGUCGCGCGgGUCGUGCCuGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 13092 | 0.8 | 0.094172 |
Target: 5'- cGGCGGGCGGCGgGCUCGGCuCGGGg- -3' miRNA: 3'- -CCGCUCGUCGCgCGGGUCGuGCCUgu -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 58889 | 0.8 | 0.094172 |
Target: 5'- gGGCGGGCcucgcaGGCGCGCgCCAGCGCGcGCAc -3' miRNA: 3'- -CCGCUCG------UCGCGCG-GGUCGUGCcUGU- -5' |
|||||||
23688 | 3' | -61.7 | NC_005261.1 | + | 107322 | 0.8 | 0.096625 |
Target: 5'- cGCGuGCAGCuCGCCCAGCACGGcCu -3' miRNA: 3'- cCGCuCGUCGcGCGGGUCGUGCCuGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home