miRNA display CGI


Results 1 - 20 of 525 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 3' -61.7 NC_005261.1 + 17200 1.1 0.000629
Target:  5'- cGGCGAGCAGCGCGCCCAGCACGGACAg -3'
miRNA:   3'- -CCGCUCGUCGCGCGGGUCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 74755 0.85 0.042992
Target:  5'- uGGCGcGGCAGCGCGCCacaGGCGCGGAg- -3'
miRNA:   3'- -CCGC-UCGUCGCGCGGg--UCGUGCCUgu -5'
23688 3' -61.7 NC_005261.1 + 53721 0.83 0.058978
Target:  5'- cGGCcagcuGCGGCGCGCCC-GCACGGGCGa -3'
miRNA:   3'- -CCGcu---CGUCGCGCGGGuCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 31434 0.82 0.070824
Target:  5'- aGGCGcuGGCGGCGcCGCCCGGCGaGGACGa -3'
miRNA:   3'- -CCGC--UCGUCGC-GCGGGUCGUgCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 90397 0.81 0.072693
Target:  5'- cGGCgGGGCuG-GCGCCCGGCGCGGACu -3'
miRNA:   3'- -CCG-CUCGuCgCGCGGGUCGUGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 67110 0.8 0.08494
Target:  5'- uGCGGGCGGCGCGCgCAGUGCGG-CGg -3'
miRNA:   3'- cCGCUCGUCGCGCGgGUCGUGCCuGU- -5'
23688 3' -61.7 NC_005261.1 + 13092 0.8 0.094172
Target:  5'- cGGCGGGCGGCGgGCUCGGCuCGGGg- -3'
miRNA:   3'- -CCGCUCGUCGCgCGGGUCGuGCCUgu -5'
23688 3' -61.7 NC_005261.1 + 58889 0.8 0.094172
Target:  5'- gGGCGGGCcucgcaGGCGCGCgCCAGCGCGcGCAc -3'
miRNA:   3'- -CCGCUCG------UCGCGCG-GGUCGUGCcUGU- -5'
23688 3' -61.7 NC_005261.1 + 107322 0.8 0.096625
Target:  5'- cGCGuGCAGCuCGCCCAGCACGGcCu -3'
miRNA:   3'- cCGCuCGUCGcGCGGGUCGUGCCuGu -5'
23688 3' -61.7 NC_005261.1 + 70693 0.79 0.099138
Target:  5'- aGGCGucCAGCGCgGCCC-GCGCGGGCAc -3'
miRNA:   3'- -CCGCucGUCGCG-CGGGuCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 3874 0.79 0.100675
Target:  5'- cGGCGAGCacGGCGCGCagcucggcgagcgCGGCGCGGGCGc -3'
miRNA:   3'- -CCGCUCG--UCGCGCGg------------GUCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 33782 0.79 0.101712
Target:  5'- cGGCGAGCGcUGgGCCCcGCGCGGGCGg -3'
miRNA:   3'- -CCGCUCGUcGCgCGGGuCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 92934 0.79 0.104349
Target:  5'- cGGCgGAGCAGC-UGCCCGGCGuccCGGACAa -3'
miRNA:   3'- -CCG-CUCGUCGcGCGGGUCGU---GCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 4503 0.79 0.109818
Target:  5'- cGCGGGCcccagucGCGCGCCC-GCGCGGGCGc -3'
miRNA:   3'- cCGCUCGu------CGCGCGGGuCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 117280 0.79 0.113805
Target:  5'- cGGCGAGCcuGGCGCcgagcccgcccucgaGCCCAGCcccggcGCGGGCAg -3'
miRNA:   3'- -CCGCUCG--UCGCG---------------CGGGUCG------UGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 72754 0.78 0.115554
Target:  5'- uGGCGGGCcGCaUGCCCAGCACGG-CGg -3'
miRNA:   3'- -CCGCUCGuCGcGCGGGUCGUGCCuGU- -5'
23688 3' -61.7 NC_005261.1 + 98201 0.78 0.12437
Target:  5'- cGGCGGGCAGCggGCGCCgccacggCAGCgcgGCGGGCAu -3'
miRNA:   3'- -CCGCUCGUCG--CGCGG-------GUCG---UGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 86688 0.78 0.124685
Target:  5'- cGGCGAgGCGGCccacguacGCGCCCAGCGCGucCAg -3'
miRNA:   3'- -CCGCU-CGUCG--------CGCGGGUCGUGCcuGU- -5'
23688 3' -61.7 NC_005261.1 + 128102 0.78 0.127552
Target:  5'- gGGCGAGCGGCGCggcgcggggucggGCCgAGUGCGGAgAg -3'
miRNA:   3'- -CCGCUCGUCGCG-------------CGGgUCGUGCCUgU- -5'
23688 3' -61.7 NC_005261.1 + 49214 0.78 0.127874
Target:  5'- gGGCGGGaGGCcgGCGCCCAGCGCGcGCAg -3'
miRNA:   3'- -CCGCUCgUCG--CGCGGGUCGUGCcUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.