miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 59474 0.66 0.699362
Target:  5'- -gGGGgcaGCGCCGGcGcGGCcgccgcgccaGCGGCGGCGg -3'
miRNA:   3'- uaUCUa--CGCGGCC-C-UCG----------UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 107579 0.66 0.699362
Target:  5'- aGUAGGgcGCgaagGCCGGGucccgcAGgACGGCAGCGg -3'
miRNA:   3'- -UAUCUa-CG----CGGCCC------UCgUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 31042 0.66 0.699362
Target:  5'- -----cGcCGCCGGGuccccAGCGCGGCGGgAg -3'
miRNA:   3'- uaucuaC-GCGGCCC-----UCGUGCCGUCgU- -5'
23690 5' -59.7 NC_005261.1 + 1400 0.66 0.689274
Target:  5'- -----gGCGCCGcGGc-CGCGGCGGCGg -3'
miRNA:   3'- uaucuaCGCGGC-CCucGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 88169 0.66 0.689274
Target:  5'- -cAGccGgGCCGGGGcgacGC-CGGCGGCGc -3'
miRNA:   3'- uaUCuaCgCGGCCCU----CGuGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 30081 0.66 0.689274
Target:  5'- cUAGcgGCGCacccGGAGCGCgugcuccgGGCAGCu -3'
miRNA:   3'- uAUCuaCGCGgc--CCUCGUG--------CCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 4825 0.66 0.689274
Target:  5'- -----cGCGuuGGGcGCagGCGGCGGCGu -3'
miRNA:   3'- uaucuaCGCggCCCuCG--UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 35201 0.66 0.689274
Target:  5'- -aGGAgcagGCuuGCCGGGAGU--GGCGGCu -3'
miRNA:   3'- uaUCUa---CG--CGGCCCUCGugCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 64060 0.66 0.689274
Target:  5'- --uGGUGCGCCaccGGcugccGCACGGUGGCGu -3'
miRNA:   3'- uauCUACGCGGc--CCu----CGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 68711 0.66 0.689274
Target:  5'- -cGGcgGCGCCGGcccucacgcggcGGGCGCcGGCGGgAa -3'
miRNA:   3'- uaUCuaCGCGGCC------------CUCGUG-CCGUCgU- -5'
23690 5' -59.7 NC_005261.1 + 107540 0.66 0.689274
Target:  5'- -cGGcgGCcaccagcacGuCCGaGAGCACGGCAGCGg -3'
miRNA:   3'- uaUCuaCG---------C-GGCcCUCGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 103866 0.66 0.689274
Target:  5'- -cGGcgGCGgCGGGgcGGCGCcgccgGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCgGCCC--UCGUG-----CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 31578 0.66 0.689274
Target:  5'- -cGGgcGCGCCGGacguGAGCGCGcuCGGCGc -3'
miRNA:   3'- uaUCuaCGCGGCC----CUCGUGCc-GUCGU- -5'
23690 5' -59.7 NC_005261.1 + 113890 0.66 0.689274
Target:  5'- uGUAGcgGCGaCgCGGcGGGCGCgauggccgaGGCAGCGg -3'
miRNA:   3'- -UAUCuaCGC-G-GCC-CUCGUG---------CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 11102 0.66 0.689274
Target:  5'- -gGGAcGCGaCGGGAcgagauGCGcCGGCAGCGu -3'
miRNA:   3'- uaUCUaCGCgGCCCU------CGU-GCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 31439 0.66 0.687251
Target:  5'- cUGGcgGCGCCGcccggcgaggacGAGCGcCGGCGGCc -3'
miRNA:   3'- uAUCuaCGCGGCc-----------CUCGU-GCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 115417 0.66 0.67914
Target:  5'- -gGGcgGCaGCCGGGGcCGCGGCccgAGCu -3'
miRNA:   3'- uaUCuaCG-CGGCCCUcGUGCCG---UCGu -5'
23690 5' -59.7 NC_005261.1 + 71 0.66 0.67914
Target:  5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3'
miRNA:   3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5'
23690 5' -59.7 NC_005261.1 + 137754 0.66 0.67914
Target:  5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3'
miRNA:   3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5'
23690 5' -59.7 NC_005261.1 + 312 0.66 0.67914
Target:  5'- -nGGcUGCGgCGGcGGCuGCGGCGGCGg -3'
miRNA:   3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.