Results 21 - 40 of 158 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 31578 | 0.66 | 0.689274 |
Target: 5'- -cGGgcGCGCCGGacguGAGCGCGcuCGGCGc -3' miRNA: 3'- uaUCuaCGCGGCC----CUCGUGCc-GUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 88169 | 0.66 | 0.689274 |
Target: 5'- -cAGccGgGCCGGGGcgacGC-CGGCGGCGc -3' miRNA: 3'- uaUCuaCgCGGCCCU----CGuGCCGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 64060 | 0.66 | 0.689274 |
Target: 5'- --uGGUGCGCCaccGGcugccGCACGGUGGCGu -3' miRNA: 3'- uauCUACGCGGc--CCu----CGUGCCGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 312 | 0.66 | 0.67914 |
Target: 5'- -nGGcUGCGgCGGcGGCuGCGGCGGCGg -3' miRNA: 3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 95659 | 0.66 | 0.67914 |
Target: 5'- --cGcgGCGCCGcgacGGGCGCGGguGUg -3' miRNA: 3'- uauCuaCGCGGCc---CUCGUGCCguCGu -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 4825 | 0.66 | 0.689274 |
Target: 5'- -----cGCGuuGGGcGCagGCGGCGGCGu -3' miRNA: 3'- uaucuaCGCggCCCuCG--UGCCGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 137754 | 0.66 | 0.67914 |
Target: 5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3' miRNA: 3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 30081 | 0.66 | 0.689274 |
Target: 5'- cUAGcgGCGCacccGGAGCGCgugcuccgGGCAGCu -3' miRNA: 3'- uAUCuaCGCGgc--CCUCGUG--------CCGUCGu -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 31042 | 0.66 | 0.699362 |
Target: 5'- -----cGcCGCCGGGuccccAGCGCGGCGGgAg -3' miRNA: 3'- uaucuaC-GCGGCCC-----UCGUGCCGUCgU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 68711 | 0.66 | 0.689274 |
Target: 5'- -cGGcgGCGCCGGcccucacgcggcGGGCGCcGGCGGgAa -3' miRNA: 3'- uaUCuaCGCGGCC------------CUCGUG-CCGUCgU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 71 | 0.66 | 0.67914 |
Target: 5'- --cGgcGCGCgCGGGGGCG-GGguGCGg -3' miRNA: 3'- uauCuaCGCG-GCCCUCGUgCCguCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 1060 | 0.66 | 0.668966 |
Target: 5'- uUAGcgGCGCgGGGGGC-UGGCcccgcuccagGGCGa -3' miRNA: 3'- uAUCuaCGCGgCCCUCGuGCCG----------UCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 119785 | 0.67 | 0.606568 |
Target: 5'- --cGGUcGCGUaccgcagCGcGGAGCugGGCGGCAa -3' miRNA: 3'- uauCUA-CGCG-------GC-CCUCGugCCGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 69302 | 0.67 | 0.597379 |
Target: 5'- --cGggGCGCCGGuGGCGgCGGgAGCGg -3' miRNA: 3'- uauCuaCGCGGCCcUCGU-GCCgUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 9118 | 0.67 | 0.597379 |
Target: 5'- -gAGAggGcCGCCGGGAcuggGgGCGGguGCAg -3' miRNA: 3'- uaUCUa-C-GCGGCCCU----CgUGCCguCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 81368 | 0.67 | 0.597379 |
Target: 5'- -gGGggGCGCCGGGcucGCugGG-GGCGc -3' miRNA: 3'- uaUCuaCGCGGCCCu--CGugCCgUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 54886 | 0.67 | 0.607589 |
Target: 5'- --uGAUGCGUCGGcGcGCGCGugccGCAGCGc -3' miRNA: 3'- uauCUACGCGGCC-CuCGUGC----CGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 33785 | 0.67 | 0.597379 |
Target: 5'- --cGA-GCGCUGGGccccGCGCGgGCGGCGg -3' miRNA: 3'- uauCUaCGCGGCCCu---CGUGC-CGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 123022 | 0.67 | 0.648538 |
Target: 5'- -----gGCGuCCGcGAGCGuCGGCAGCAg -3' miRNA: 3'- uaucuaCGC-GGCcCUCGU-GCCGUCGU- -5' |
|||||||
23690 | 5' | -59.7 | NC_005261.1 | + | 137935 | 0.67 | 0.648538 |
Target: 5'- -cGGcUGCGgCGGcGGCuGCGGCGGCGg -3' miRNA: 3'- uaUCuACGCgGCCcUCG-UGCCGUCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home