miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 98774 0.66 0.75213
Target:  5'- uGCCGCcgCCGGCcGCCG-GCCgcgCGUGc -3'
miRNA:   3'- -CGGCG--GGCCGcUGGUgCGGaaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 68134 0.75 0.267536
Target:  5'- cGCgGCgCGGCGACCGCGCCguggcCGg- -3'
miRNA:   3'- -CGgCGgGCCGCUGGUGCGGaaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 62999 0.75 0.273813
Target:  5'- aGCCgGCCCucGGCGGCCGCGCCcgcgCGg- -3'
miRNA:   3'- -CGG-CGGG--CCGCUGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 106227 0.75 0.273813
Target:  5'- gGCCGCCUGGCGcggccGCCGCGCCcuacCGg- -3'
miRNA:   3'- -CGGCGGGCCGC-----UGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 122349 0.75 0.273813
Target:  5'- aGCuCGCCUGGCGGCCGCGgCUcgCGc- -3'
miRNA:   3'- -CG-GCGGGCCGCUGGUGCgGAaaGCau -5'
23691 5' -59.8 NC_005261.1 + 86598 0.74 0.280207
Target:  5'- cGCCGUCCuuGGCGucgGCCGCGCCgccgUCGUc -3'
miRNA:   3'- -CGGCGGG--CCGC---UGGUGCGGaa--AGCAu -5'
23691 5' -59.8 NC_005261.1 + 35043 0.74 0.293349
Target:  5'- cGCCGCCCuaacGGCGGCCGCGCgg--CGg- -3'
miRNA:   3'- -CGGCGGG----CCGCUGGUGCGgaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 106273 0.74 0.299419
Target:  5'- uGCCGCCgGGCGGCCcgugcaaACGCCg-UCGa- -3'
miRNA:   3'- -CGGCGGgCCGCUGG-------UGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 30197 0.73 0.321066
Target:  5'- gGCCGCCgcgcuggaGGCGGCCGCGCUgg-CGg- -3'
miRNA:   3'- -CGGCGGg-------CCGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 101790 0.75 0.255333
Target:  5'- uGCCGCCCGGCGggGCUGCGCa---CGUAc -3'
miRNA:   3'- -CGGCGGGCCGC--UGGUGCGgaaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 31446 0.75 0.243589
Target:  5'- cGCCGCCCGGCGAggacgaGCGCCgg-CGg- -3'
miRNA:   3'- -CGGCGGGCCGCUgg----UGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 110947 0.76 0.240155
Target:  5'- cGCCGCCCGGCGGCCcacccGggagagcugcauguaCGCCgccUUCGUGc -3'
miRNA:   3'- -CGGCGGGCCGCUGG-----U---------------GCGGa--AAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 31101 0.82 0.084991
Target:  5'- uGCCGCCCGGCGGCCcCGCCgc-CGa- -3'
miRNA:   3'- -CGGCGGGCCGCUGGuGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 121630 0.81 0.112981
Target:  5'- cGCCGCUCGGCGGCCGcCGCCgg-CGa- -3'
miRNA:   3'- -CGGCGGGCCGCUGGU-GCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 100711 0.79 0.135065
Target:  5'- cGCCGCCCGagccGCGGCCGCGCCgcgCGc- -3'
miRNA:   3'- -CGGCGGGC----CGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 77047 0.78 0.157087
Target:  5'- cGCgGCCCucGGCGACCGCGCCUggcCGg- -3'
miRNA:   3'- -CGgCGGG--CCGCUGGUGCGGAaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 88837 0.77 0.186842
Target:  5'- cGCCgGCCCGGCGucggcuaccuggGCCGCGCCUcgCGg- -3'
miRNA:   3'- -CGG-CGGGCCGC------------UGGUGCGGAaaGCau -5'
23691 5' -59.8 NC_005261.1 + 100068 0.77 0.201052
Target:  5'- cGCCGCCCGGgGgcgcGCCGCGCCccUCGc- -3'
miRNA:   3'- -CGGCGGGCCgC----UGGUGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 15794 0.76 0.216192
Target:  5'- cGCCGCCCGcGCGGCCAgCGCCg------ -3'
miRNA:   3'- -CGGCGGGC-CGCUGGU-GCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 12139 0.76 0.221452
Target:  5'- cGCCGCCgCGGCGGCCGCGCa------- -3'
miRNA:   3'- -CGGCGG-GCCGCUGGUGCGgaaagcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.