miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 1335 0.66 0.742654
Target:  5'- cGCCGCC--GCG-CCGCGCCUgcaccagCGUc -3'
miRNA:   3'- -CGGCGGgcCGCuGGUGCGGAaa-----GCAu -5'
23691 5' -59.8 NC_005261.1 + 1428 0.67 0.644206
Target:  5'- cGgCGCCCGccuccagcaccaGCGGCgGCGCCUcggCGUGc -3'
miRNA:   3'- -CgGCGGGC------------CGCUGgUGCGGAaa-GCAU- -5'
23691 5' -59.8 NC_005261.1 + 1907 0.66 0.742654
Target:  5'- cGCCGCUcaggccagcgcgCGGCGcACUGCGCCg--CGg- -3'
miRNA:   3'- -CGGCGG------------GCCGC-UGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 1972 0.66 0.713703
Target:  5'- cGCCuGCCCGaCGGCCGgGCCa-UCGg- -3'
miRNA:   3'- -CGG-CGGGCcGCUGGUgCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 2237 0.71 0.423317
Target:  5'- cGCCGCgcaCCGGCGGCCAcucaggcCGCCggcgcUCGUc -3'
miRNA:   3'- -CGGCG---GGCCGCUGGU-------GCGGaa---AGCAu -5'
23691 5' -59.8 NC_005261.1 + 2377 0.7 0.519503
Target:  5'- cGCCGCCgcagcggcgcgcuggCGGCGAgCGCGCCcg-CGg- -3'
miRNA:   3'- -CGGCGG---------------GCCGCUgGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 2603 0.67 0.644206
Target:  5'- aGCCGCCguCGGCGGCgGgGCCgc-CGg- -3'
miRNA:   3'- -CGGCGG--GCCGCUGgUgCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 2990 0.66 0.703907
Target:  5'- gGCUcgGCCUGGCGGCCcgGCGCCg------ -3'
miRNA:   3'- -CGG--CGGGCCGCUGG--UGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 3461 0.67 0.644206
Target:  5'- cGCCGCgCCGcGCGucgaguACCGCGCCag-CGg- -3'
miRNA:   3'- -CGGCG-GGC-CGC------UGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 3727 0.67 0.661229
Target:  5'- cGCCGCUgccggacgcgccggCGGCGcACCGCGCCgccUCu-- -3'
miRNA:   3'- -CGGCGG--------------GCCGC-UGGUGCGGaa-AGcau -5'
23691 5' -59.8 NC_005261.1 + 4027 0.66 0.723431
Target:  5'- gGCCGCCaCGuGCGGCaGCGCCcacagcgCGUu -3'
miRNA:   3'- -CGGCGG-GC-CGCUGgUGCGGaaa----GCAu -5'
23691 5' -59.8 NC_005261.1 + 4930 0.66 0.733085
Target:  5'- cGCgGCCgCGaGCGcCCGCGCCg--CGg- -3'
miRNA:   3'- -CGgCGG-GC-CGCuGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 5151 0.69 0.574225
Target:  5'- cGCCucgGCCCGGCgGGCCGCGUCgagCa-- -3'
miRNA:   3'- -CGG---CGGGCCG-CUGGUGCGGaaaGcau -5'
23691 5' -59.8 NC_005261.1 + 6257 0.66 0.733085
Target:  5'- cCCGCCCcgcggGGCGGCC-CGCCgccaaacucaUUGUAa -3'
miRNA:   3'- cGGCGGG-----CCGCUGGuGCGGaa--------AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 11928 0.67 0.664228
Target:  5'- gGCgGCUgCGGCGGcCCGCGCCg--CGg- -3'
miRNA:   3'- -CGgCGG-GCCGCU-GGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 12071 0.66 0.733085
Target:  5'- uGCgGCagCGGCGuCCGCGCCggggCGg- -3'
miRNA:   3'- -CGgCGg-GCCGCuGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 12139 0.76 0.221452
Target:  5'- cGCCGCCgCGGCGGCCGCGCa------- -3'
miRNA:   3'- -CGGCGG-GCCGCUGGUGCGgaaagcau -5'
23691 5' -59.8 NC_005261.1 + 12352 0.71 0.450647
Target:  5'- cGCCGCCgCGGCGGCaaccggCGCGUCU-UCGa- -3'
miRNA:   3'- -CGGCGG-GCCGCUG------GUGCGGAaAGCau -5'
23691 5' -59.8 NC_005261.1 + 12505 0.66 0.713703
Target:  5'- gGCCcCCCgGGCGACCGCGCg------- -3'
miRNA:   3'- -CGGcGGG-CCGCUGGUGCGgaaagcau -5'
23691 5' -59.8 NC_005261.1 + 12620 0.66 0.700957
Target:  5'- cGCCGCCaccacgguguagucCGGCGcggucugggGCCGCGCCggcgCGa- -3'
miRNA:   3'- -CGGCGG--------------GCCGC---------UGGUGCGGaaa-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.