miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 135691 0.69 0.574225
Target:  5'- cGCCGCgCGGCGGCUAaGCC--UCGc- -3'
miRNA:   3'- -CGGCGgGCCGCUGGUgCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 135442 0.7 0.468784
Target:  5'- cGCCGCCCaGGCGGCgCggGCGCUgcgggaccUCGUAc -3'
miRNA:   3'- -CGGCGGG-CCGCUG-G--UGCGGaa------AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 135092 0.67 0.674206
Target:  5'- cGCgGCCCGGCGGCggaGCGCgaggCGg- -3'
miRNA:   3'- -CGgCGGGCCGCUGg--UGCGgaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 135027 0.66 0.733085
Target:  5'- cGCgGCCgCGGCGgcgagGCCgACGCCUgcggCGg- -3'
miRNA:   3'- -CGgCGG-GCCGC-----UGG-UGCGGAaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 133848 0.7 0.515668
Target:  5'- cGCCGUggCCGGCGcgcgcgacuGCCGCGCCUaccUGUGg -3'
miRNA:   3'- -CGGCG--GGCCGC---------UGGUGCGGAaa-GCAU- -5'
23691 5' -59.8 NC_005261.1 + 132601 0.66 0.742654
Target:  5'- cGCCcgGCCCGGCGAgC-CGCCa------ -3'
miRNA:   3'- -CGG--CGGGCCGCUgGuGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 132360 0.66 0.703907
Target:  5'- uCCGCCgCGGCGcgcucGCCGCGCUcg-CGg- -3'
miRNA:   3'- cGGCGG-GCCGC-----UGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 132091 0.66 0.723431
Target:  5'- cGCUGCCgcggagGGCGGCCGCGaCgCgcUCGUGg -3'
miRNA:   3'- -CGGCGGg-----CCGCUGGUGC-G-GaaAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 131976 0.7 0.496669
Target:  5'- uGCCGCgCGGCcACCAgGCCU-UCGc- -3'
miRNA:   3'- -CGGCGgGCCGcUGGUgCGGAaAGCau -5'
23691 5' -59.8 NC_005261.1 + 131823 0.66 0.742654
Target:  5'- cGCCGCCgcuugacgCGGCG-CC-CGCCUgcugCGg- -3'
miRNA:   3'- -CGGCGG--------GCCGCuGGuGCGGAaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 131781 0.66 0.70489
Target:  5'- cGCCGCUgGGCcccgacgccgcgcccGCCGCGCCUgaCGg- -3'
miRNA:   3'- -CGGCGGgCCGc--------------UGGUGCGGAaaGCau -5'
23691 5' -59.8 NC_005261.1 + 131621 0.67 0.674206
Target:  5'- cGCgCGCCUGGCG-CC-CGCCg--CGa- -3'
miRNA:   3'- -CG-GCGGGCCGCuGGuGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 131430 0.71 0.450647
Target:  5'- aGCgGCgCCGGCGccccccuugcGCCGCGCCUcgCGg- -3'
miRNA:   3'- -CGgCG-GGCCGC----------UGGUGCGGAaaGCau -5'
23691 5' -59.8 NC_005261.1 + 131175 0.68 0.614123
Target:  5'- uGCUGCCgCaGCGGCUACGCCcg-CGg- -3'
miRNA:   3'- -CGGCGG-GcCGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 130919 0.68 0.614123
Target:  5'- cGCCGCuuaCCGGCGGCUcuACGCCa------ -3'
miRNA:   3'- -CGGCG---GGCCGCUGG--UGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 130856 0.68 0.584156
Target:  5'- cGCgCGCCCGGCcgggcgccgcGGCCugGCCUcgCu-- -3'
miRNA:   3'- -CG-GCGGGCCG----------CUGGugCGGAaaGcau -5'
23691 5' -59.8 NC_005261.1 + 130587 0.7 0.487288
Target:  5'- cGCCGCgCGGCc-CCGCGCCUggccCGUc -3'
miRNA:   3'- -CGGCGgGCCGcuGGUGCGGAaa--GCAu -5'
23691 5' -59.8 NC_005261.1 + 130420 0.67 0.653224
Target:  5'- gGCCaggaggaGCCCGGCcGCgGCGCCUa-CGUGg -3'
miRNA:   3'- -CGG-------CGGGCCGcUGgUGCGGAaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 130236 0.69 0.544691
Target:  5'- cCCGCUCaGGCG-CCGCGCCagcggcUCGUAc -3'
miRNA:   3'- cGGCGGG-CCGCuGGUGCGGaa----AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 130103 0.7 0.468784
Target:  5'- uCCGCgCCaGCGACUGCGCCUUggCGa- -3'
miRNA:   3'- cGGCG-GGcCGCUGGUGCGGAAa-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.