Results 1 - 20 of 253 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23691 | 5' | -59.8 | NC_005261.1 | + | 14544 | 1.08 | 0.001486 |
Target: 5'- gGCCGCCCGGCGACCACGCCUUUCGUAc -3' miRNA: 3'- -CGGCGGGCCGCUGGUGCGGAAAGCAU- -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 31101 | 0.82 | 0.084991 |
Target: 5'- uGCCGCCCGGCGGCCcCGCCgc-CGa- -3' miRNA: 3'- -CGGCGGGCCGCUGGuGCGGaaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 121630 | 0.81 | 0.112981 |
Target: 5'- cGCCGCUCGGCGGCCGcCGCCgg-CGa- -3' miRNA: 3'- -CGGCGGGCCGCUGGU-GCGGaaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 100711 | 0.79 | 0.135065 |
Target: 5'- cGCCGCCCGagccGCGGCCGCGCCgcgCGc- -3' miRNA: 3'- -CGGCGGGC----CGCUGGUGCGGaaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 77047 | 0.78 | 0.157087 |
Target: 5'- cGCgGCCCucGGCGACCGCGCCUggcCGg- -3' miRNA: 3'- -CGgCGGG--CCGCUGGUGCGGAaa-GCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 88837 | 0.77 | 0.186842 |
Target: 5'- cGCCgGCCCGGCGucggcuaccuggGCCGCGCCUcgCGg- -3' miRNA: 3'- -CGG-CGGGCCGC------------UGGUGCGGAaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 100068 | 0.77 | 0.201052 |
Target: 5'- cGCCGCCCGGgGgcgcGCCGCGCCccUCGc- -3' miRNA: 3'- -CGGCGGGCCgC----UGGUGCGGaaAGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 15794 | 0.76 | 0.216192 |
Target: 5'- cGCCGCCCGcGCGGCCAgCGCCg------ -3' miRNA: 3'- -CGGCGGGC-CGCUGGU-GCGGaaagcau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 12139 | 0.76 | 0.221452 |
Target: 5'- cGCCGCCgCGGCGGCCGCGCa------- -3' miRNA: 3'- -CGGCGG-GCCGCUGGUGCGgaaagcau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 110947 | 0.76 | 0.240155 |
Target: 5'- cGCCGCCCGGCGGCCcacccGggagagcugcauguaCGCCgccUUCGUGc -3' miRNA: 3'- -CGGCGGGCCGCUGG-----U---------------GCGGa--AAGCAU- -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 31446 | 0.75 | 0.243589 |
Target: 5'- cGCCGCCCGGCGAggacgaGCGCCgg-CGg- -3' miRNA: 3'- -CGGCGGGCCGCUgg----UGCGGaaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 101790 | 0.75 | 0.255333 |
Target: 5'- uGCCGCCCGGCGggGCUGCGCa---CGUAc -3' miRNA: 3'- -CGGCGGGCCGC--UGGUGCGgaaaGCAU- -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 68134 | 0.75 | 0.267536 |
Target: 5'- cGCgGCgCGGCGACCGCGCCguggcCGg- -3' miRNA: 3'- -CGgCGgGCCGCUGGUGCGGaaa--GCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 62999 | 0.75 | 0.273813 |
Target: 5'- aGCCgGCCCucGGCGGCCGCGCCcgcgCGg- -3' miRNA: 3'- -CGG-CGGG--CCGCUGGUGCGGaaa-GCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 106227 | 0.75 | 0.273813 |
Target: 5'- gGCCGCCUGGCGcggccGCCGCGCCcuacCGg- -3' miRNA: 3'- -CGGCGGGCCGC-----UGGUGCGGaaa-GCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 122349 | 0.75 | 0.273813 |
Target: 5'- aGCuCGCCUGGCGGCCGCGgCUcgCGc- -3' miRNA: 3'- -CG-GCGGGCCGCUGGUGCgGAaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 86598 | 0.74 | 0.280207 |
Target: 5'- cGCCGUCCuuGGCGucgGCCGCGCCgccgUCGUc -3' miRNA: 3'- -CGGCGGG--CCGC---UGGUGCGGaa--AGCAu -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 35043 | 0.74 | 0.293349 |
Target: 5'- cGCCGCCCuaacGGCGGCCGCGCgg--CGg- -3' miRNA: 3'- -CGGCGGG----CCGCUGGUGCGgaaaGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 106273 | 0.74 | 0.299419 |
Target: 5'- uGCCGCCgGGCGGCCcgugcaaACGCCg-UCGa- -3' miRNA: 3'- -CGGCGGgCCGCUGG-------UGCGGaaAGCau -5' |
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23691 | 5' | -59.8 | NC_005261.1 | + | 32316 | 0.73 | 0.321066 |
Target: 5'- cGCCGCCgCGGCcGCgGCGCCcggCGUGg -3' miRNA: 3'- -CGGCGG-GCCGcUGgUGCGGaaaGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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