miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 32316 0.73 0.321066
Target:  5'- cGCCGCCgCGGCcGCgGCGCCcggCGUGg -3'
miRNA:   3'- -CGGCGG-GCCGcUGgUGCGGaaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 30197 0.73 0.321066
Target:  5'- gGCCGCCgcgcuggaGGCGGCCGCGCUgg-CGg- -3'
miRNA:   3'- -CGGCGGg-------CCGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 122705 0.73 0.328294
Target:  5'- cGCCGCgCCGcCGGCCGCGCCg-UCGa- -3'
miRNA:   3'- -CGGCG-GGCcGCUGGUGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 101091 0.73 0.334902
Target:  5'- gGCCGCCUGcagcGCGGCCgcgcGCGCCUUggcgcccUCGUGg -3'
miRNA:   3'- -CGGCGGGC----CGCUGG----UGCGGAA-------AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 119054 0.73 0.335642
Target:  5'- -gCGCCC-GCGGCCGCGCgugugCUUUCGUGg -3'
miRNA:   3'- cgGCGGGcCGCUGGUGCG-----GAAAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 93590 0.73 0.343109
Target:  5'- cGCgCGCUCGGCGACCuCGCCg-UCGc- -3'
miRNA:   3'- -CG-GCGGGCCGCUGGuGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 58545 0.73 0.350696
Target:  5'- cGCCGCCCgGGCucCUGCGCCg-UCGUGg -3'
miRNA:   3'- -CGGCGGG-CCGcuGGUGCGGaaAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 107125 0.72 0.366223
Target:  5'- aCCGCgCCGGCGACgGCGCCca-CGg- -3'
miRNA:   3'- cGGCG-GGCCGCUGgUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 28819 0.72 0.374162
Target:  5'- cGCCGCCgaagccgaGGCGGCCGCGgCUgaggcggccgUCGUGg -3'
miRNA:   3'- -CGGCGGg-------CCGCUGGUGCgGAa---------AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 109336 0.72 0.382217
Target:  5'- gGCCGCggggUCGGCGGCCGCGUCgc-CGUc -3'
miRNA:   3'- -CGGCG----GGCCGCUGGUGCGGaaaGCAu -5'
23691 5' -59.8 NC_005261.1 + 107870 0.72 0.382217
Target:  5'- gGCCGCCCGcGCGcUCGCGCCcg-CGg- -3'
miRNA:   3'- -CGGCGGGC-CGCuGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 50348 0.72 0.382217
Target:  5'- aGCCGCCgGuaGGCCGCGCCcgUCa-- -3'
miRNA:   3'- -CGGCGGgCcgCUGGUGCGGaaAGcau -5'
23691 5' -59.8 NC_005261.1 + 84284 0.72 0.390387
Target:  5'- uGCCG-CCGGCGGCCccggccccggcgGCGCCgaaggCGUAg -3'
miRNA:   3'- -CGGCgGGCCGCUGG------------UGCGGaaa--GCAU- -5'
23691 5' -59.8 NC_005261.1 + 88591 0.72 0.390387
Target:  5'- cGCCgagGCCCGGCccGGCgGCGCCacggUCGUGa -3'
miRNA:   3'- -CGG---CGGGCCG--CUGgUGCGGaa--AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 84665 0.72 0.39867
Target:  5'- cGCCGCCCGcgcccGCGGCCGCGCaca-CGa- -3'
miRNA:   3'- -CGGCGGGC-----CGCUGGUGCGgaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 78141 0.72 0.39867
Target:  5'- cGCCGcCCCGGCGcccGCCGCuGCCgg-CGg- -3'
miRNA:   3'- -CGGC-GGGCCGC---UGGUG-CGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 21081 0.72 0.39867
Target:  5'- uGUCGCCCGGCaauacguuccgcGACCGCGCCg------ -3'
miRNA:   3'- -CGGCGGGCCG------------CUGGUGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 47609 0.72 0.39867
Target:  5'- aGCCGCCCccugcgggGGCGGCCGCgGCCgccgCGc- -3'
miRNA:   3'- -CGGCGGG--------CCGCUGGUG-CGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 46982 0.72 0.407065
Target:  5'- cGCCGCCCGccggcagcGCGcGCCGCGCCgccgCGa- -3'
miRNA:   3'- -CGGCGGGC--------CGC-UGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 31143 0.71 0.41557
Target:  5'- uGCCGCCCGGgGAguaccacacgcCCGCGCCcagCGc- -3'
miRNA:   3'- -CGGCGGGCCgCU-----------GGUGCGGaaaGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.