miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 115207 0.66 0.742654
Target:  5'- -gCGCCCGuGCGuCCGCGgCgcgaUCGUGu -3'
miRNA:   3'- cgGCGGGC-CGCuGGUGCgGaa--AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 31253 0.66 0.733085
Target:  5'- uGgCGCCCGGCG-CU-CGCCU-UCGa- -3'
miRNA:   3'- -CgGCGGGCCGCuGGuGCGGAaAGCau -5'
23691 5' -59.8 NC_005261.1 + 50880 0.66 0.733085
Target:  5'- cGCCGCgCUGGCGcuGCUAUGCUggUCa-- -3'
miRNA:   3'- -CGGCG-GGCCGC--UGGUGCGGaaAGcau -5'
23691 5' -59.8 NC_005261.1 + 60857 0.66 0.733085
Target:  5'- cGCgCGCCgGGcCGAgcCCGCGCCgugUUCa-- -3'
miRNA:   3'- -CG-GCGGgCC-GCU--GGUGCGGa--AAGcau -5'
23691 5' -59.8 NC_005261.1 + 47336 0.66 0.733085
Target:  5'- cGCgCGCgUCGGCGACgACGCag-UCGa- -3'
miRNA:   3'- -CG-GCG-GGCCGCUGgUGCGgaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 113658 0.66 0.733085
Target:  5'- -gCGCCUGaucgaccucugcGcCGACCGCGCCccgUUCGUGg -3'
miRNA:   3'- cgGCGGGC------------C-GCUGGUGCGGa--AAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 28280 0.66 0.733085
Target:  5'- uGCCGCCgCcGCGGCCGCggucGUCUccUUCGUu -3'
miRNA:   3'- -CGGCGG-GcCGCUGGUG----CGGA--AAGCAu -5'
23691 5' -59.8 NC_005261.1 + 4930 0.66 0.733085
Target:  5'- cGCgGCCgCGaGCGcCCGCGCCg--CGg- -3'
miRNA:   3'- -CGgCGG-GC-CGCuGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 46137 0.66 0.733085
Target:  5'- cGCCGCCCGagaacgccgagcGCGGCacuGCGCCccagUCGc- -3'
miRNA:   3'- -CGGCGGGC------------CGCUGg--UGCGGaa--AGCau -5'
23691 5' -59.8 NC_005261.1 + 12071 0.66 0.733085
Target:  5'- uGCgGCagCGGCGuCCGCGCCggggCGg- -3'
miRNA:   3'- -CGgCGg-GCCGCuGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 57401 0.66 0.733085
Target:  5'- aGCgCGCCCGugauccGCGGCCGgCGCCg--CGa- -3'
miRNA:   3'- -CG-GCGGGC------CGCUGGU-GCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 6257 0.66 0.733085
Target:  5'- cCCGCCCcgcggGGCGGCC-CGCCgccaaacucaUUGUAa -3'
miRNA:   3'- cGGCGGG-----CCGCUGGuGCGGaa--------AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 135027 0.66 0.733085
Target:  5'- cGCgGCCgCGGCGgcgagGCCgACGCCUgcggCGg- -3'
miRNA:   3'- -CGgCGG-GCCGC-----UGG-UGCGGAaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 73719 0.66 0.733085
Target:  5'- aCCGCggUCGGCGugCGCGCUUgcgCGc- -3'
miRNA:   3'- cGGCG--GGCCGCugGUGCGGAaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 92754 0.66 0.733085
Target:  5'- cGCCGCCCGcGCcgcucgGACCGgGCCgagccCGg- -3'
miRNA:   3'- -CGGCGGGC-CG------CUGGUgCGGaaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 52355 0.66 0.730197
Target:  5'- uGCCGCCggagccggagcccgCGGCGGCgGCcCCggUCGUc -3'
miRNA:   3'- -CGGCGG--------------GCCGCUGgUGcGGaaAGCAu -5'
23691 5' -59.8 NC_005261.1 + 67522 0.66 0.723431
Target:  5'- cGUCGCCgCGGCGcCCGCGgCgg-CGa- -3'
miRNA:   3'- -CGGCGG-GCCGCuGGUGCgGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 89279 0.66 0.723431
Target:  5'- gGCUGgcguuCCCGGCGGCCgccaACGCCgaggaccUCGUc -3'
miRNA:   3'- -CGGC-----GGGCCGCUGG----UGCGGaa-----AGCAu -5'
23691 5' -59.8 NC_005261.1 + 104102 0.66 0.723431
Target:  5'- cGgCGCuCCGcGCGACCGCaGCCgcgCGg- -3'
miRNA:   3'- -CgGCG-GGC-CGCUGGUG-CGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 77505 0.66 0.723431
Target:  5'- uGCCGCCCGccaucGCcGCCGCGCCcc-CGc- -3'
miRNA:   3'- -CGGCGGGC-----CGcUGGUGCGGaaaGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.