miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 14544 1.08 0.001486
Target:  5'- gGCCGCCCGGCGACCACGCCUUUCGUAc -3'
miRNA:   3'- -CGGCGGGCCGCUGGUGCGGAAAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 15372 0.66 0.713703
Target:  5'- cGgCGCUCGGCGcCCucgGCGCCgccgUCGa- -3'
miRNA:   3'- -CgGCGGGCCGCuGG---UGCGGaa--AGCau -5'
23691 5' -59.8 NC_005261.1 + 15794 0.76 0.216192
Target:  5'- cGCCGCCCGcGCGGCCAgCGCCg------ -3'
miRNA:   3'- -CGGCGGGC-CGCUGGU-GCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 16684 0.68 0.614123
Target:  5'- uCCGUguaGGCGACCGCGCCg-UCGa- -3'
miRNA:   3'- cGGCGgg-CCGCUGGUGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 21081 0.72 0.39867
Target:  5'- uGUCGCCCGGCaauacguuccgcGACCGCGCCg------ -3'
miRNA:   3'- -CGGCGGGCCG------------CUGGUGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 21779 0.68 0.624147
Target:  5'- aGCCGCCgCGGCGcgggccGCCGCaGCCgc-CGg- -3'
miRNA:   3'- -CGGCGG-GCCGC------UGGUG-CGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 22687 0.68 0.614123
Target:  5'- cGCCgggggacggGCCCGGCGACgAgGCCg-UCGa- -3'
miRNA:   3'- -CGG---------CGGGCCGCUGgUgCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 23707 0.69 0.568284
Target:  5'- cCCGCCCGGuCGgguggcaagcgggugGCCGCGCCgaggcgCGUc -3'
miRNA:   3'- cGGCGGGCC-GC---------------UGGUGCGGaaa---GCAu -5'
23691 5' -59.8 NC_005261.1 + 28191 0.69 0.574225
Target:  5'- cGCCGaagCCGGCGGCCuCGCCgc-CGc- -3'
miRNA:   3'- -CGGCg--GGCCGCUGGuGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 28280 0.66 0.733085
Target:  5'- uGCCGCCgCcGCGGCCGCggucGUCUccUUCGUu -3'
miRNA:   3'- -CGGCGG-GcCGCUGGUG----CGGA--AAGCAu -5'
23691 5' -59.8 NC_005261.1 + 28377 0.68 0.624147
Target:  5'- aGCCGgCUGGcCGAcCCGCGCCUcUCc-- -3'
miRNA:   3'- -CGGCgGGCC-GCU-GGUGCGGAaAGcau -5'
23691 5' -59.8 NC_005261.1 + 28819 0.72 0.374162
Target:  5'- cGCCGCCgaagccgaGGCGGCCGCGgCUgaggcggccgUCGUGg -3'
miRNA:   3'- -CGGCGGg-------CCGCUGGUGCgGAa---------AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 29176 0.68 0.594121
Target:  5'- gGCCaggGCCCGGCGcCCuCGCCg--CGg- -3'
miRNA:   3'- -CGG---CGGGCCGCuGGuGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 29327 0.7 0.496669
Target:  5'- cGCCGCCCGGCcGCgUGCGCU--UCGg- -3'
miRNA:   3'- -CGGCGGGCCGcUG-GUGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 29406 0.68 0.594121
Target:  5'- gGCCGCgcgcuacgCGGCGGCCGCggggcccgcgGCCgugUUCGUGc -3'
miRNA:   3'- -CGGCGg-------GCCGCUGGUG----------CGGa--AAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 29802 0.66 0.75213
Target:  5'- gGCCgGCgCCGGCGGcgcgggcgcCCGCGCCgcgcUCGc- -3'
miRNA:   3'- -CGG-CG-GGCCGCU---------GGUGCGGaa--AGCau -5'
23691 5' -59.8 NC_005261.1 + 29863 0.66 0.713703
Target:  5'- gGCCGCgCGGCGcCgGCGCCg------ -3'
miRNA:   3'- -CGGCGgGCCGCuGgUGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 30197 0.73 0.321066
Target:  5'- gGCCGCCgcgcuggaGGCGGCCGCGCUgg-CGg- -3'
miRNA:   3'- -CGGCGGg-------CCGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 30335 0.68 0.584156
Target:  5'- gGCgCGgCUGGCGGCCGCGCUcg-CGg- -3'
miRNA:   3'- -CG-GCgGGCCGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 30911 0.69 0.542739
Target:  5'- gGCCGCCCGGCcccucccGGCCGCcggcgcaGCCccUCGg- -3'
miRNA:   3'- -CGGCGGGCCG-------CUGGUG-------CGGaaAGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.