miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 57566 0.66 0.723431
Target:  5'- -gCGCCCGGCucCgGCGCCg--CGUu -3'
miRNA:   3'- cgGCGGGCCGcuGgUGCGGaaaGCAu -5'
23691 5' -59.8 NC_005261.1 + 132360 0.66 0.703907
Target:  5'- uCCGCCgCGGCGcgcucGCCGCGCUcg-CGg- -3'
miRNA:   3'- cGGCGG-GCCGC-----UGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 104102 0.66 0.723431
Target:  5'- cGgCGCuCCGcGCGACCGCaGCCgcgCGg- -3'
miRNA:   3'- -CgGCG-GGC-CGCUGGUG-CGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 4930 0.66 0.733085
Target:  5'- cGCgGCCgCGaGCGcCCGCGCCg--CGg- -3'
miRNA:   3'- -CGgCGG-GC-CGCuGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 1972 0.66 0.713703
Target:  5'- cGCCuGCCCGaCGGCCGgGCCa-UCGg- -3'
miRNA:   3'- -CGG-CGGGCcGCUGGUgCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 92943 0.66 0.703907
Target:  5'- aGCUGCCCGGCGucccggacaaagGCUGCGCacg-CGg- -3'
miRNA:   3'- -CGGCGGGCCGC------------UGGUGCGgaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 12071 0.66 0.733085
Target:  5'- uGCgGCagCGGCGuCCGCGCCggggCGg- -3'
miRNA:   3'- -CGgCGg-GCCGCuGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 118117 0.66 0.723431
Target:  5'- cGCUGCgCCGcCGGCuCGCGCCgcUCGg- -3'
miRNA:   3'- -CGGCG-GGCcGCUG-GUGCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 131781 0.66 0.70489
Target:  5'- cGCCGCUgGGCcccgacgccgcgcccGCCGCGCCUgaCGg- -3'
miRNA:   3'- -CGGCGGgCCGc--------------UGGUGCGGAaaGCau -5'
23691 5' -59.8 NC_005261.1 + 135027 0.66 0.733085
Target:  5'- cGCgGCCgCGGCGgcgagGCCgACGCCUgcggCGg- -3'
miRNA:   3'- -CGgCGG-GCCGC-----UGG-UGCGGAaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 96090 0.66 0.703907
Target:  5'- uGCgGCCCGGCGcaACC-UGCUUgUCGg- -3'
miRNA:   3'- -CGgCGGGCCGC--UGGuGCGGAaAGCau -5'
23691 5' -59.8 NC_005261.1 + 113658 0.66 0.733085
Target:  5'- -gCGCCUGaucgaccucugcGcCGACCGCGCCccgUUCGUGg -3'
miRNA:   3'- cgGCGGGC------------C-GCUGGUGCGGa--AAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 98774 0.66 0.75213
Target:  5'- uGCCGCcgCCGGCcGCCG-GCCgcgCGUGc -3'
miRNA:   3'- -CGGCG--GGCCGcUGGUgCGGaaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 77505 0.66 0.723431
Target:  5'- uGCCGCCCGccaucGCcGCCGCGCCcc-CGc- -3'
miRNA:   3'- -CGGCGGGC-----CGcUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 15372 0.66 0.713703
Target:  5'- cGgCGCUCGGCGcCCucgGCGCCgccgUCGa- -3'
miRNA:   3'- -CgGCGGGCCGCuGG---UGCGGaa--AGCau -5'
23691 5' -59.8 NC_005261.1 + 132091 0.66 0.723431
Target:  5'- cGCUGCCgcggagGGCGGCCGCGaCgCgcUCGUGg -3'
miRNA:   3'- -CGGCGGg-----CCGCUGGUGC-G-GaaAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 51967 0.66 0.72052
Target:  5'- cGCCGCCgcgcugcuggaccgCGGCG-CCGcCGCCgacUUCGa- -3'
miRNA:   3'- -CGGCGG--------------GCCGCuGGU-GCGGa--AAGCau -5'
23691 5' -59.8 NC_005261.1 + 57401 0.66 0.733085
Target:  5'- aGCgCGCCCGugauccGCGGCCGgCGCCg--CGa- -3'
miRNA:   3'- -CG-GCGGGC------CGCUGGU-GCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 106932 0.66 0.723431
Target:  5'- gGCCGCCa-GCGACaCGCGCaccUCGg- -3'
miRNA:   3'- -CGGCGGgcCGCUG-GUGCGgaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 92194 0.66 0.703907
Target:  5'- cGCCGCCgcUGGCGcaGCCGCcgaaGCCggcgUCGUc -3'
miRNA:   3'- -CGGCGG--GCCGC--UGGUG----CGGaa--AGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.