miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 96090 0.66 0.703907
Target:  5'- uGCgGCCCGGCGcaACC-UGCUUgUCGg- -3'
miRNA:   3'- -CGgCGGGCCGC--UGGuGCGGAaAGCau -5'
23691 5' -59.8 NC_005261.1 + 12620 0.66 0.700957
Target:  5'- cGCCGCCaccacgguguagucCGGCGcggucugggGCCGCGCCggcgCGa- -3'
miRNA:   3'- -CGGCGG--------------GCCGC---------UGGUGCGGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 118513 0.66 0.713703
Target:  5'- cGCCGCUCGGCGaggcgcccuGCCcCGCCgaccccugCGg- -3'
miRNA:   3'- -CGGCGGGCCGC---------UGGuGCGGaaa-----GCau -5'
23691 5' -59.8 NC_005261.1 + 92943 0.66 0.703907
Target:  5'- aGCUGCCCGGCGucccggacaaagGCUGCGCacg-CGg- -3'
miRNA:   3'- -CGGCGGGCCGC------------UGGUGCGgaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 68207 0.66 0.71077
Target:  5'- cGCCGCCggcgcggccgacaaCGGCGACCcugacggcggggGCGUg-UUCGUGg -3'
miRNA:   3'- -CGGCGG--------------GCCGCUGG------------UGCGgaAAGCAU- -5'
23691 5' -59.8 NC_005261.1 + 15372 0.66 0.713703
Target:  5'- cGgCGCUCGGCGcCCucgGCGCCgccgUCGa- -3'
miRNA:   3'- -CgGCGGGCCGCuGG---UGCGGaa--AGCau -5'
23691 5' -59.8 NC_005261.1 + 2990 0.66 0.703907
Target:  5'- gGCUcgGCCUGGCGGCCcgGCGCCg------ -3'
miRNA:   3'- -CGG--CGGGCCGCUGG--UGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 131781 0.66 0.70489
Target:  5'- cGCCGCUgGGCcccgacgccgcgcccGCCGCGCCUgaCGg- -3'
miRNA:   3'- -CGGCGGgCCGc--------------UGGUGCGGAaaGCau -5'
23691 5' -59.8 NC_005261.1 + 98774 0.66 0.75213
Target:  5'- uGCCGCcgCCGGCcGCCG-GCCgcgCGUGc -3'
miRNA:   3'- -CGGCG--GGCCGcUGGUgCGGaaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 92194 0.66 0.703907
Target:  5'- cGCCGCCgcUGGCGcaGCCGCcgaaGCCggcgUCGUc -3'
miRNA:   3'- -CGGCGG--GCCGC--UGGUG----CGGaa--AGCAu -5'
23691 5' -59.8 NC_005261.1 + 54110 0.66 0.703907
Target:  5'- gGCCGCCCGcaCGACCGCGggc-UCGUc -3'
miRNA:   3'- -CGGCGGGCc-GCUGGUGCggaaAGCAu -5'
23691 5' -59.8 NC_005261.1 + 132360 0.66 0.703907
Target:  5'- uCCGCCgCGGCGcgcucGCCGCGCUcg-CGg- -3'
miRNA:   3'- cGGCGG-GCCGC-----UGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 108659 0.66 0.703907
Target:  5'- cGCCaGcCCCGGCG-UCGCGuCCUcgUCGUc -3'
miRNA:   3'- -CGG-C-GGGCCGCuGGUGC-GGAa-AGCAu -5'
23691 5' -59.8 NC_005261.1 + 73351 0.66 0.713703
Target:  5'- uCCGCCCGGCGccggcucagGCgGCGCCa------ -3'
miRNA:   3'- cGGCGGGCCGC---------UGgUGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 85021 0.66 0.713703
Target:  5'- gGUCGCgCGGCcGCCGCGCCc--CGg- -3'
miRNA:   3'- -CGGCGgGCCGcUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 51643 0.66 0.703907
Target:  5'- uGCUGCCCGG--GCC-CGCCU-UCGg- -3'
miRNA:   3'- -CGGCGGGCCgcUGGuGCGGAaAGCau -5'
23691 5' -59.8 NC_005261.1 + 29863 0.66 0.713703
Target:  5'- gGCCGCgCGGCGcCgGCGCCg------ -3'
miRNA:   3'- -CGGCGgGCCGCuGgUGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 1972 0.66 0.713703
Target:  5'- cGCCuGCCCGaCGGCCGgGCCa-UCGg- -3'
miRNA:   3'- -CGG-CGGGCcGCUGGUgCGGaaAGCau -5'
23691 5' -59.8 NC_005261.1 + 51967 0.66 0.72052
Target:  5'- cGCCGCCgcgcugcuggaccgCGGCG-CCGcCGCCgacUUCGa- -3'
miRNA:   3'- -CGGCGG--------------GCCGCuGGU-GCGGa--AAGCau -5'
23691 5' -59.8 NC_005261.1 + 76862 0.66 0.703907
Target:  5'- cGCCGCCUGGCGcccggcgaggagGCCgacggcACGCUcUUCGc- -3'
miRNA:   3'- -CGGCGGGCCGC------------UGG------UGCGGaAAGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.