miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 5' -59.3 NC_005261.1 + 7332 0.66 0.771836
Target:  5'- -aCGGAAaaGGGGGaggaggaGAGaGGGAGAGGg -3'
miRNA:   3'- ugGCCUUcaCCCCCg------CUC-CCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 96846 0.66 0.771836
Target:  5'- gGCCGGGGucgacgGGGGGCucGGGggGcgcGGGu -3'
miRNA:   3'- -UGGCCUUca----CCCCCGcuCCCuuC---UCU- -5'
23694 5' -59.3 NC_005261.1 + 68599 0.66 0.771836
Target:  5'- -gCGGGAGcGGGGccgacggcGUGGGGGAGGAu- -3'
miRNA:   3'- ugGCCUUCaCCCC--------CGCUCCCUUCUcu -5'
23694 5' -59.3 NC_005261.1 + 25380 0.66 0.771836
Target:  5'- cCCGGcacGGcGcGcGGGuCGGGGGAGGAGAg -3'
miRNA:   3'- uGGCCu--UCaC-C-CCC-GCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 16177 0.66 0.762552
Target:  5'- gGCgCGGgcGUGGcGGGgGuGGGcGGGGGc -3'
miRNA:   3'- -UG-GCCuuCACC-CCCgCuCCCuUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 69925 0.66 0.762552
Target:  5'- aACCgcaGGggGUGGGGugggaGCcGGGGAuagcGGAGGg -3'
miRNA:   3'- -UGG---CCuuCACCCC-----CGcUCCCU----UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 74451 0.66 0.751265
Target:  5'- gGCgGGggGUGGGGGCGccgcccccggcgcGGcgugccuGGgcGGGAu -3'
miRNA:   3'- -UGgCCuuCACCCCCGC-------------UC-------CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 33124 0.66 0.743658
Target:  5'- uCCGcGAacAGaGGGGGagGGGGGAGGAGc -3'
miRNA:   3'- uGGC-CU--UCaCCCCCg-CUCCCUUCUCu -5'
23694 5' -59.3 NC_005261.1 + 35255 0.66 0.740789
Target:  5'- gGCgGGAugggaggcagugguGGUgacGGGcGGUGAGGGAGGAcGAg -3'
miRNA:   3'- -UGgCCU--------------UCA---CCC-CCGCUCCCUUCU-CU- -5'
23694 5' -59.3 NC_005261.1 + 22131 0.66 0.734064
Target:  5'- -gCGGuauacGGcGGGGG-GGGGGAAGGGGc -3'
miRNA:   3'- ugGCCu----UCaCCCCCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 46025 0.66 0.734064
Target:  5'- uCCGGGAGcaggacGGGGGCGcGGu-AGAGGg -3'
miRNA:   3'- uGGCCUUCa-----CCCCCGCuCCcuUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 69318 0.66 0.7331
Target:  5'- -gCGGGAGcGGGGGUGAcGGcGAcagcgacGGAGAc -3'
miRNA:   3'- ugGCCUUCaCCCCCGCU-CC-CU-------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 128060 0.66 0.724386
Target:  5'- aACCGGGccaUGGcGGGCGGGcGGgcGAGc -3'
miRNA:   3'- -UGGCCUuc-ACC-CCCGCUC-CCuuCUCu -5'
23694 5' -59.3 NC_005261.1 + 97962 0.66 0.724386
Target:  5'- --gGGAGGUGGcGGCGGagcggugcccGGGGAGAGu -3'
miRNA:   3'- uggCCUUCACCcCCGCU----------CCCUUCUCu -5'
23694 5' -59.3 NC_005261.1 + 78420 0.67 0.71463
Target:  5'- -gUGGGcgauGGgGGGGGCGAuGGGGAGAa- -3'
miRNA:   3'- ugGCCU----UCaCCCCCGCU-CCCUUCUcu -5'
23694 5' -59.3 NC_005261.1 + 15434 0.67 0.71463
Target:  5'- gGCCGGgcGcGGGccGGCGAuGGaGAAGAGc -3'
miRNA:   3'- -UGGCCuuCaCCC--CCGCU-CC-CUUCUCu -5'
23694 5' -59.3 NC_005261.1 + 136392 0.67 0.71463
Target:  5'- uGCCGGGAcUGGGGGCGGacGuGGugucGGAGc -3'
miRNA:   3'- -UGGCCUUcACCCCCGCU--C-CCu---UCUCu -5'
23694 5' -59.3 NC_005261.1 + 34302 0.67 0.71463
Target:  5'- cGCCGGGAGcgagaccgacgGGGaGGcCGAGGGGccccaAGGGGc -3'
miRNA:   3'- -UGGCCUUCa----------CCC-CC-GCUCCCU-----UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 48134 0.67 0.704807
Target:  5'- cGCgGGaAAGaGGGGG-GAGGGuggcGAGAGAg -3'
miRNA:   3'- -UGgCC-UUCaCCCCCgCUCCC----UUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 15026 0.67 0.694924
Target:  5'- gUCGGcGGGUgccGGGGGCGuAGcGGggGGGGu -3'
miRNA:   3'- uGGCC-UUCA---CCCCCGC-UC-CCuuCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.