miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 118671 0.7 0.44707
Target:  5'- gGGGCUGaGGgcGGcgGGCGCuGGcGCACGCg -3'
miRNA:   3'- -CUCGAC-CCuuCC--UCGCG-CCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 118346 0.67 0.661358
Target:  5'- cGGGCUGcuccucggccucucGGccGG-GCGCuGGGGCGCGCg -3'
miRNA:   3'- -CUCGAC--------------CCuuCCuCGCG-CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 115549 0.69 0.542647
Target:  5'- cGGCUGGuGcAGGuccGUGUGGcAGCACACg -3'
miRNA:   3'- cUCGACC-CuUCCu--CGCGCC-UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 115152 0.67 0.633792
Target:  5'- cGAGCcgGGGGucGGGcgccuccuGCGCGauGGGCACGCg -3'
miRNA:   3'- -CUCGa-CCCU--UCCu-------CGCGC--CUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 108904 0.67 0.623571
Target:  5'- -cGCcGGcGAGcGGGGCGCGGGGUcggggcccaGCACg -3'
miRNA:   3'- cuCGaCC-CUU-CCUCGCGCCUCG---------UGUG- -5'
23699 5' -59.3 NC_005261.1 + 105293 0.68 0.613357
Target:  5'- cGAGCccGGGcgcGcGAGCGCGGGGUccucGCACu -3'
miRNA:   3'- -CUCGa-CCCuu-C-CUCGCGCCUCG----UGUG- -5'
23699 5' -59.3 NC_005261.1 + 101685 0.66 0.73454
Target:  5'- cGAGCcGGcGAAGcGGGCGUGGucgaAGCGCu- -3'
miRNA:   3'- -CUCGaCC-CUUC-CUCGCGCC----UCGUGug -5'
23699 5' -59.3 NC_005261.1 + 98920 0.66 0.73454
Target:  5'- cGGCgGGGucGGcuGCGgGGGGCAgCGCg -3'
miRNA:   3'- cUCGaCCCuuCCu-CGCgCCUCGU-GUG- -5'
23699 5' -59.3 NC_005261.1 + 98707 0.73 0.338268
Target:  5'- gGAGCUGGGGccGGGGUccgGCcuugGGGGCACGCg -3'
miRNA:   3'- -CUCGACCCUu-CCUCG---CG----CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 98356 0.66 0.6948
Target:  5'- gGGGCgGGGguGG-GCGCGGgcucuggcgGGCGCAa -3'
miRNA:   3'- -CUCGaCCCuuCCuCGCGCC---------UCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 97991 0.67 0.644011
Target:  5'- aGAGUgaagUGGGAGGcGGCGgGGGcGCugGCg -3'
miRNA:   3'- -CUCG----ACCCUUCcUCGCgCCU-CGugUG- -5'
23699 5' -59.3 NC_005261.1 + 97622 0.71 0.429074
Target:  5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 97595 0.71 0.429074
Target:  5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 97093 0.68 0.572714
Target:  5'- cGGCUGGGccGGGGGCGCcagccGGGC-CGCg -3'
miRNA:   3'- cUCGACCCu-UCCUCGCGc----CUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 96845 0.66 0.684711
Target:  5'- aGGCcGGGGucgacgGGGGGCuCGGGGgGCGCg -3'
miRNA:   3'- cUCGaCCCU------UCCUCGcGCCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 92726 0.67 0.664413
Target:  5'- gGAGC-GGGAGcGGGGCGgGGAcaGCgaGCGCc -3'
miRNA:   3'- -CUCGaCCCUU-CCUCGCgCCU--CG--UGUG- -5'
23699 5' -59.3 NC_005261.1 + 92696 0.71 0.420238
Target:  5'- cGAGC-GGGAgcGGGAGCG-GGAGCGggaGCg -3'
miRNA:   3'- -CUCGaCCCU--UCCUCGCgCCUCGUg--UG- -5'
23699 5' -59.3 NC_005261.1 + 92140 0.66 0.724715
Target:  5'- cGGGCUGGGccAGGAcCuCGGcgAGCGCGCg -3'
miRNA:   3'- -CUCGACCCu-UCCUcGcGCC--UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 90197 0.71 0.4029
Target:  5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3'
miRNA:   3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 88464 0.69 0.532737
Target:  5'- uGAGCgugUGGGcGGGccgugccGCGcCGGAGCGCGCc -3'
miRNA:   3'- -CUCG---ACCCuUCCu------CGC-GCCUCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.