miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23701 3' -46.2 NC_005261.1 + 100210 0.66 0.999923
Target:  5'- gGCCAGCagcccCGCGUAGAGCUCGGc-- -3'
miRNA:   3'- -CGGUCGcaa--GCGUGUUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 92156 0.66 0.999923
Target:  5'- cUCGGCGagCGCGC---GCUCGGUGGa -3'
miRNA:   3'- cGGUCGCaaGCGUGuuuUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 75319 0.66 0.999898
Target:  5'- cGUCGGCGg-CGCGCGGAGCcCuGUGAc -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGaGuUAUU- -5'
23701 3' -46.2 NC_005261.1 + 44982 0.66 0.999898
Target:  5'- gGCCcgGGCGggcCGcCACAGGuGCUCGAUGAc -3'
miRNA:   3'- -CGG--UCGCaa-GC-GUGUUU-UGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 108515 0.66 0.999866
Target:  5'- gGCCAcGCcg-CGCACGAAGggguCUCGGUAGg -3'
miRNA:   3'- -CGGU-CGcaaGCGUGUUUU----GAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 63625 0.66 0.999866
Target:  5'- cCCAGCGUUgacgcugucgCGCACGAAGC-CGu--- -3'
miRNA:   3'- cGGUCGCAA----------GCGUGUUUUGaGUuauu -5'
23701 3' -46.2 NC_005261.1 + 48211 0.66 0.999866
Target:  5'- gGCCGGCGcgCGUuuCAGAGCgcgCAAa-- -3'
miRNA:   3'- -CGGUCGCaaGCGu-GUUUUGa--GUUauu -5'
23701 3' -46.2 NC_005261.1 + 17006 0.66 0.999866
Target:  5'- cGCCAGCaugUCGCACGcggccgcGCUCGu--- -3'
miRNA:   3'- -CGGUCGca-AGCGUGUuu-----UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 59258 0.66 0.999866
Target:  5'- cGCCGGCGccacgcgUCGCACGGcGugUCGc--- -3'
miRNA:   3'- -CGGUCGCa------AGCGUGUU-UugAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 14940 0.66 0.999825
Target:  5'- cGCCAGCuggCGCugGAAGCgagCGGg-- -3'
miRNA:   3'- -CGGUCGcaaGCGugUUUUGa--GUUauu -5'
23701 3' -46.2 NC_005261.1 + 56367 0.66 0.999825
Target:  5'- aCCGGCGaggCGCACGucucccagGAGCUCGcgGGg -3'
miRNA:   3'- cGGUCGCaa-GCGUGU--------UUUGAGUuaUU- -5'
23701 3' -46.2 NC_005261.1 + 53489 0.66 0.999825
Target:  5'- aCUAGCGcUCGCGCcaGGGGCUCGu--- -3'
miRNA:   3'- cGGUCGCaAGCGUG--UUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 15232 0.66 0.999825
Target:  5'- aGCCGGCGUugaggccccgcUCGCAguGGGCcgCGAUc- -3'
miRNA:   3'- -CGGUCGCA-----------AGCGUguUUUGa-GUUAuu -5'
23701 3' -46.2 NC_005261.1 + 103824 0.66 0.999773
Target:  5'- cGCCAGCaGcUCGCGgaGGAGCUCGc--- -3'
miRNA:   3'- -CGGUCG-CaAGCGUg-UUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 106935 0.66 0.999773
Target:  5'- cGCCAGCGacaCGCGCAc--CUCGGc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUuuuGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 115926 0.66 0.999773
Target:  5'- cGCC-GCGUccgCGCGCGGGGCagGGUAc -3'
miRNA:   3'- -CGGuCGCAa--GCGUGUUUUGagUUAUu -5'
23701 3' -46.2 NC_005261.1 + 28592 0.67 0.999708
Target:  5'- cGCCGGCGggccgccCGCGCcGAGCUgGcgGAg -3'
miRNA:   3'- -CGGUCGCaa-----GCGUGuUUUGAgUuaUU- -5'
23701 3' -46.2 NC_005261.1 + 22828 0.67 0.999708
Target:  5'- cGCCGcCGUUgGCGCcGGGCUCGGg-- -3'
miRNA:   3'- -CGGUcGCAAgCGUGuUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 119653 0.67 0.999627
Target:  5'- aCCGGCGgcgCGCGCcuGGAGCUCu---- -3'
miRNA:   3'- cGGUCGCaa-GCGUG--UUUUGAGuuauu -5'
23701 3' -46.2 NC_005261.1 + 12321 0.67 0.999528
Target:  5'- aGCCGGCGggCGCGC---GCUUGGc-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.