miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 115715 0.68 0.732781
Target:  5'- cGCCCGaGUGCCGCCGgGggacGgGCCcgGCGa -3'
miRNA:   3'- -CGGGUaCAUGGUGGUgUa---CgCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 113850 0.67 0.824953
Target:  5'- cGCCCAcGUACCugGCCGgGcgGCGCCa-- -3'
miRNA:   3'- -CGGGUaCAUGG--UGGUgUa-CGCGGcgc -5'
23705 3' -56.9 NC_005261.1 + 112586 0.73 0.472969
Target:  5'- aGCUCAgGcGCCAUCugGUgGCGCCGCGc -3'
miRNA:   3'- -CGGGUaCaUGGUGGugUA-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 110782 0.66 0.864267
Target:  5'- -gCCGUGUgcgccuuucauccACCGCCACcguUGCuuGCCGCc -3'
miRNA:   3'- cgGGUACA-------------UGGUGGUGu--ACG--CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 110129 0.66 0.865019
Target:  5'- uGCUCGggggggcgcUGuUGCCGCCGCc-GCGgCCGCGg -3'
miRNA:   3'- -CGGGU---------AC-AUGGUGGUGuaCGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 109617 0.67 0.824953
Target:  5'- cGCCUGg--GCCGCgGCGcggGCGCuCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUGgUGUa--CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 109509 0.66 0.857399
Target:  5'- gGCgCGgacGCCGCCGCcUGCGCCcaacGCGg -3'
miRNA:   3'- -CGgGUacaUGGUGGUGuACGCGG----CGC- -5'
23705 3' -56.9 NC_005261.1 + 109209 0.67 0.816385
Target:  5'- gGCCCGgc-GCCcucGCCGCG-GCGcCCGCGc -3'
miRNA:   3'- -CGGGUacaUGG---UGGUGUaCGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 109165 0.71 0.580901
Target:  5'- gGCCCGcGcagGCUacGCCGCG-GCGCCGCGc -3'
miRNA:   3'- -CGGGUaCa--UGG--UGGUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 109082 0.66 0.831682
Target:  5'- gGCCCGgcagcgcgccGCCGCCGCccG-GCCGCGu -3'
miRNA:   3'- -CGGGUaca-------UGGUGGUGuaCgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108608 0.76 0.336682
Target:  5'- cGCCCAUGgcCUACCcggagGCcgGCGCCgGCGg -3'
miRNA:   3'- -CGGGUACauGGUGG-----UGuaCGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 108543 0.69 0.713009
Target:  5'- cGCgCCGUGcucgccgGCCGCgcggCGCcgGCGCCGCu -3'
miRNA:   3'- -CG-GGUACa------UGGUG----GUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 108375 0.66 0.870228
Target:  5'- aGCuCCcgGUGCUcucggcugcagcggGCCGCGgccUGCcgGCCGCGg -3'
miRNA:   3'- -CG-GGuaCAUGG--------------UGGUGU---ACG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108203 0.67 0.789711
Target:  5'- cGCCgAggcgGCCGCCGCGcuggagGCGgCCGCGc -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108076 0.68 0.771206
Target:  5'- aGCCCGccggcggaaGUGCCGgCGCGgcugGCGgCCGCGc -3'
miRNA:   3'- -CGGGUa--------CAUGGUgGUGUa---CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108032 0.73 0.482401
Target:  5'- gGCCC-UGaagGCCGgCGCGccggGCGCCGCGg -3'
miRNA:   3'- -CGGGuACa--UGGUgGUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107435 0.66 0.857399
Target:  5'- gGCCuCGaGgcCCGCCGCGacgGCccGCCGCGg -3'
miRNA:   3'- -CGG-GUaCauGGUGGUGUa--CG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107310 0.69 0.722934
Target:  5'- cGCCCGcGUGCUggGCCcCAUGCcGCCcgGCGg -3'
miRNA:   3'- -CGGGUaCAUGG--UGGuGUACG-CGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 107245 0.76 0.314529
Target:  5'- cGCCCGgggaGUACCAcacgcCCGCGcccaGCGCCGCGg -3'
miRNA:   3'- -CGGGUa---CAUGGU-----GGUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107091 0.66 0.833346
Target:  5'- gGCCC----GCCGCCGCGcgggGC-CCGCGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUa---CGcGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.