miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 3' -57.2 NC_005261.1 + 37713 0.66 0.859173
Target:  5'- gUUCGC-GCGCGAGUgcaCCgcggccgcggcgcgCGCCGCCc -3'
miRNA:   3'- uGAGCGaCGUGCUCGa--GGa-------------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 87468 0.66 0.856084
Target:  5'- cCUCGCcggGCGCgGGGCUCCccugcuucuaCGCgGCCg -3'
miRNA:   3'- uGAGCGa--CGUG-CUCGAGGa---------GUGgUGG- -5'
23706 3' -57.2 NC_005261.1 + 73486 0.66 0.856084
Target:  5'- aGCagCGCgugguucaGCGCGGcguGCUCCugcUCGCCGCCc -3'
miRNA:   3'- -UGa-GCGa-------CGUGCU---CGAGG---AGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 52230 0.66 0.856084
Target:  5'- -gUCGCUGUACGcGCUgUUCAUggucccgaagaCACCg -3'
miRNA:   3'- ugAGCGACGUGCuCGAgGAGUG-----------GUGG- -5'
23706 3' -57.2 NC_005261.1 + 86807 0.66 0.856084
Target:  5'- cCUCGCcGC-CGuGCUCCUCcugaCGCUg -3'
miRNA:   3'- uGAGCGaCGuGCuCGAGGAGug--GUGG- -5'
23706 3' -57.2 NC_005261.1 + 61887 0.66 0.856084
Target:  5'- cGCUCGCgcGCGCGAGCaugCC-CGuCUACg -3'
miRNA:   3'- -UGAGCGa-CGUGCUCGa--GGaGU-GGUGg -5'
23706 3' -57.2 NC_005261.1 + 61596 0.66 0.856084
Target:  5'- cGCUgGCgccGCGCGAGCgCUUcCugUACCu -3'
miRNA:   3'- -UGAgCGa--CGUGCUCGaGGA-GugGUGG- -5'
23706 3' -57.2 NC_005261.1 + 51140 0.66 0.855307
Target:  5'- cGCUCGCgcccacuUGCACG-GUcgUCgCGCCGCCg -3'
miRNA:   3'- -UGAGCG-------ACGUGCuCGa-GGaGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 104682 0.66 0.855307
Target:  5'- gGCcCGCUGCACGAGgggcggugggggcCUgccCCUCGCgcggCGCCg -3'
miRNA:   3'- -UGaGCGACGUGCUC-------------GA---GGAGUG----GUGG- -5'
23706 3' -57.2 NC_005261.1 + 78259 0.66 0.852963
Target:  5'- gGC-CGCgaaCACGGGCUCCcaggcgcugcaggCGCCGCUg -3'
miRNA:   3'- -UGaGCGac-GUGCUCGAGGa------------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 85278 0.66 0.85139
Target:  5'- cGCggCGCUGCGCGccgccaacagGGCggcguacgcgcgcgCCgucgCGCCGCCg -3'
miRNA:   3'- -UGa-GCGACGUGC----------UCGa-------------GGa---GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 106494 0.66 0.848221
Target:  5'- gGC-CGCUuacGCGCG-GCUCUaccccggggCGCCGCCg -3'
miRNA:   3'- -UGaGCGA---CGUGCuCGAGGa--------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 99204 0.66 0.848221
Target:  5'- gACUCGC-GCcccgGCGAGCagCCgcaccgguaGCCGCCa -3'
miRNA:   3'- -UGAGCGaCG----UGCUCGa-GGag-------UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 81100 0.66 0.848221
Target:  5'- uGCUCGCgagcagccGCGCGAcgUCCUCGuCCAUg -3'
miRNA:   3'- -UGAGCGa-------CGUGCUcgAGGAGU-GGUGg -5'
23706 3' -57.2 NC_005261.1 + 80415 0.66 0.848221
Target:  5'- --aCGCagGCGCGcGCggCCgCGCCGCCa -3'
miRNA:   3'- ugaGCGa-CGUGCuCGa-GGaGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 67271 0.66 0.848221
Target:  5'- aGCUUGCgcccGCGCGccacgacGCUCUcaagCGCCGCCc -3'
miRNA:   3'- -UGAGCGa---CGUGCu------CGAGGa---GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 56582 0.66 0.848221
Target:  5'- aGC-CGCUGCGCG-GCggugacgCCccgCGCCGCg -3'
miRNA:   3'- -UGaGCGACGUGCuCGa------GGa--GUGGUGg -5'
23706 3' -57.2 NC_005261.1 + 30747 0.66 0.848221
Target:  5'- aGCgcccgCGCUGCGCGcGCaaacUCCgcggCcCCGCCg -3'
miRNA:   3'- -UGa----GCGACGUGCuCG----AGGa---GuGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 18062 0.66 0.848221
Target:  5'- gGCgCGCUGCGucccCGAGCgcgUCUC-CCugCg -3'
miRNA:   3'- -UGaGCGACGU----GCUCGa--GGAGuGGugG- -5'
23706 3' -57.2 NC_005261.1 + 18031 0.66 0.848221
Target:  5'- cGCUggaCGgUGCGCGAcggcgccgcGC-CCUCGCgCACCg -3'
miRNA:   3'- -UGA---GCgACGUGCU---------CGaGGAGUG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.