miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 20464 0.66 0.84713
Target:  5'- aCGAAGGCCGGcugcggccCGUGCGCgcucgcugcuacgggCGCGCUc- -3'
miRNA:   3'- -GUUUCCGGCUu-------GUACGCG---------------GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 50218 0.66 0.846325
Target:  5'- --cGGGCCGGggcgacgccggcggcGCcgGCgaggcggGCCGCGCCg- -3'
miRNA:   3'- guuUCCGGCU---------------UGuaCG-------CGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 67765 0.66 0.843899
Target:  5'- ---cGGCCcAGCAUgccaaGCGCCGCgGCgCUGa -3'
miRNA:   3'- guuuCCGGcUUGUA-----CGCGGCG-CG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 137747 0.66 0.843899
Target:  5'- ---cGGCCGc-CA-GCGCCGCGUCc- -3'
miRNA:   3'- guuuCCGGCuuGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 106224 0.66 0.843899
Target:  5'- ---cGGCCGGuguaccuggccuGCggGCGgCGCGCgCUGg -3'
miRNA:   3'- guuuCCGGCU------------UGuaCGCgGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 18852 0.66 0.843899
Target:  5'- ---cGGCCGAGCAagGCcccGCCGCgggGCCg- -3'
miRNA:   3'- guuuCCGGCUUGUa-CG---CGGCG---CGGac -5'
23707 3' -57.2 NC_005261.1 + 124755 0.66 0.843899
Target:  5'- ---cGGCUGcacgcggaAGCGcGCGCCGUGCCg- -3'
miRNA:   3'- guuuCCGGC--------UUGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 106938 0.66 0.843899
Target:  5'- ---cGGCgaGGACGaGCGCCGgCGgCCUGa -3'
miRNA:   3'- guuuCCGg-CUUGUaCGCGGC-GC-GGAC- -5'
23707 3' -57.2 NC_005261.1 + 73294 0.66 0.843899
Target:  5'- aCGAAGGCgGcGCA-GCGCgaguUGCGCCa- -3'
miRNA:   3'- -GUUUCCGgCuUGUaCGCG----GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 37249 0.66 0.843899
Target:  5'- -cGAGGCUGccGCGcgGCGgCGCGCCg- -3'
miRNA:   3'- guUUCCGGCu-UGUa-CGCgGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 29370 0.66 0.843899
Target:  5'- --cGGGCCGAACGc-CGCCGUGgCg- -3'
miRNA:   3'- guuUCCGGCUUGUacGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 13463 0.66 0.843899
Target:  5'- gCGGAGGCUccgccGCGcGCGCUGUGCCg- -3'
miRNA:   3'- -GUUUCCGGcu---UGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 10720 0.66 0.843899
Target:  5'- -cGGGGCgGGACGgcgGCgGCCGCuGCCc- -3'
miRNA:   3'- guUUCCGgCUUGUa--CG-CGGCG-CGGac -5'
23707 3' -57.2 NC_005261.1 + 9580 0.66 0.835684
Target:  5'- ---cGGCgGGGCucGCGCUGCGgCUGa -3'
miRNA:   3'- guuuCCGgCUUGuaCGCGGCGCgGAC- -5'
23707 3' -57.2 NC_005261.1 + 33028 0.66 0.835684
Target:  5'- --cAGGCCGuGACAgGCGgCGCGCg-- -3'
miRNA:   3'- guuUCCGGC-UUGUaCGCgGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 79511 0.66 0.835684
Target:  5'- gGGAGGuCCGGGCGggccucgcagGCG-CGCGCCa- -3'
miRNA:   3'- gUUUCC-GGCUUGUa---------CGCgGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 85294 0.66 0.835684
Target:  5'- gGAAGGCaCGcAGCGccgcgGCGCUGCGCg-- -3'
miRNA:   3'- gUUUCCG-GC-UUGUa----CGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 92168 0.66 0.835684
Target:  5'- uCGAAGGCCGcgugGACGagcGCGUCGCagGCCg- -3'
miRNA:   3'- -GUUUCCGGC----UUGUa--CGCGGCG--CGGac -5'
23707 3' -57.2 NC_005261.1 + 2723 0.66 0.835684
Target:  5'- ---cGGCCcucgcucgagGAGCucUGCGCCGCGCg-- -3'
miRNA:   3'- guuuCCGG----------CUUGu-ACGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 75123 0.66 0.835684
Target:  5'- gCAGGGGCUGuacACcgGCGagGCGCCg- -3'
miRNA:   3'- -GUUUCCGGCu--UGuaCGCggCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.