miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 115056 0.65 0.956937
Target:  5'- gACGAGCGCGcggcgcagcgcgcGCGUGuCGGCcgugacaaacgccgAGCCGGu -3'
miRNA:   3'- gUGCUUGCGC-------------UGCAU-GUCG--------------UCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 122497 0.66 0.955005
Target:  5'- gCGCGGGCGCuuuaucucccgcccCGcGCAGCcggGGCCGGGg -3'
miRNA:   3'- -GUGCUUGCGcu------------GCaUGUCG---UCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 106717 0.66 0.954612
Target:  5'- uGCGGcuggcCGCGGCGcgGCGGCGGCUg-- -3'
miRNA:   3'- gUGCUu----GCGCUGCa-UGUCGUCGGucc -5'
23707 5' -54.3 NC_005261.1 + 42698 0.66 0.954612
Target:  5'- gCACGAGCGCGA-GUAU-GC-GCgCGGGc -3'
miRNA:   3'- -GUGCUUGCGCUgCAUGuCGuCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 98138 0.66 0.954612
Target:  5'- -gUGAGCGCcAUG-GCGGCGGCCGcGGc -3'
miRNA:   3'- guGCUUGCGcUGCaUGUCGUCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 89222 0.66 0.954612
Target:  5'- gGCGGccACgGCGGgGUGCu-CGGCCAGGc -3'
miRNA:   3'- gUGCU--UG-CGCUgCAUGucGUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 67806 0.66 0.954612
Target:  5'- gCGCGAGCgcaGCGGCGUGC-GCccGCCcgaagAGGg -3'
miRNA:   3'- -GUGCUUG---CGCUGCAUGuCGu-CGG-----UCC- -5'
23707 5' -54.3 NC_005261.1 + 136426 0.66 0.954612
Target:  5'- aCACGuGCGCcugcccGACGgccgggccauCGGCGGCCAGu -3'
miRNA:   3'- -GUGCuUGCG------CUGCau--------GUCGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 73614 0.66 0.954612
Target:  5'- uCGCGGcGCGCcacGACGUGCGGCGcagcGCCGu- -3'
miRNA:   3'- -GUGCU-UGCG---CUGCAUGUCGU----CGGUcc -5'
23707 5' -54.3 NC_005261.1 + 64710 0.66 0.954612
Target:  5'- gGCGGGCGCgGGCuuagACGGCucGGCCAuGGc -3'
miRNA:   3'- gUGCUUGCG-CUGca--UGUCG--UCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 80548 0.66 0.954612
Target:  5'- cCGCGGGCGCgGGCGgcaaggccuCGGCgcucgGGUCGGGa -3'
miRNA:   3'- -GUGCUUGCG-CUGCau-------GUCG-----UCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 29899 0.66 0.954612
Target:  5'- aCGCGcgcCGCGACGcUACccGCGGCCAc- -3'
miRNA:   3'- -GUGCuu-GCGCUGC-AUGu-CGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 90052 0.66 0.950551
Target:  5'- gGCGcGCGCGGCGagGCcgAGgAGCCGGc -3'
miRNA:   3'- gUGCuUGCGCUGCa-UG--UCgUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 80181 0.66 0.950551
Target:  5'- aGCGcGCGCGccagcagcGCGcccGCGGCGGCgGGGu -3'
miRNA:   3'- gUGCuUGCGC--------UGCa--UGUCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 77686 0.66 0.950551
Target:  5'- cCGCGcGugGCGGCGcACGGCGguGCCAc- -3'
miRNA:   3'- -GUGC-UugCGCUGCaUGUCGU--CGGUcc -5'
23707 5' -54.3 NC_005261.1 + 76092 0.66 0.950551
Target:  5'- gGCGccGCGCgGGCGcGCGGCGGCCccgcGGu -3'
miRNA:   3'- gUGCu-UGCG-CUGCaUGUCGUCGGu---CC- -5'
23707 5' -54.3 NC_005261.1 + 38784 0.66 0.950551
Target:  5'- cCGCGAGCGU--CGUccACAGCGccGCCAGc -3'
miRNA:   3'- -GUGCUUGCGcuGCA--UGUCGU--CGGUCc -5'
23707 5' -54.3 NC_005261.1 + 28723 0.66 0.950551
Target:  5'- -cCGAGCGCGG-GUGCugAGCGGaCgAGGg -3'
miRNA:   3'- guGCUUGCGCUgCAUG--UCGUC-GgUCC- -5'
23707 5' -54.3 NC_005261.1 + 1325 0.66 0.950551
Target:  5'- gCGCGGAgGCG-CGggcacccAUGGCGGCgCAGGa -3'
miRNA:   3'- -GUGCUUgCGCuGCa------UGUCGUCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 120483 0.66 0.950551
Target:  5'- gGCGAcgGCGcCGAUuaGCAGCgAGUCGGGc -3'
miRNA:   3'- gUGCU--UGC-GCUGcaUGUCG-UCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.