miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23710 3' -60.7 NC_005261.1 + 62380 0.66 0.692249
Target:  5'- cGCCcuGGCGCcG-CGCaGcGcCGCGGGCg -3'
miRNA:   3'- -CGGuuCCGCGuCaGCGaC-C-GCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 137870 0.66 0.692249
Target:  5'- --gAGGGCGCGGgcggGCggggGGCaggGCGGACg -3'
miRNA:   3'- cggUUCCGCGUCag--CGa---CCG---CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 199 0.66 0.692249
Target:  5'- --gAGGGCGCGGgcggGCggggGGCaggGCGGACg -3'
miRNA:   3'- cggUUCCGCGUCag--CGa---CCG---CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 34131 0.66 0.692249
Target:  5'- cGCgCGAGcGcCGCGGUCucggcgGCU-GCGCGGGCc -3'
miRNA:   3'- -CG-GUUC-C-GCGUCAG------CGAcCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 79901 0.66 0.692249
Target:  5'- gGCCGGcGCGCGGcCGCuuuUGGCGCccGCg -3'
miRNA:   3'- -CGGUUcCGCGUCaGCG---ACCGCGccUG- -5'
23710 3' -60.7 NC_005261.1 + 34400 0.66 0.692249
Target:  5'- cGCCGccGcCGCGGUCGgccaguaUGGCGCGcGCg -3'
miRNA:   3'- -CGGUucC-GCGUCAGCg------ACCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 82401 0.66 0.692249
Target:  5'- cGCCAucGGCaaccGCGG-CGggGGCGgGGGCg -3'
miRNA:   3'- -CGGUu-CCG----CGUCaGCgaCCGCgCCUG- -5'
23710 3' -60.7 NC_005261.1 + 122988 0.66 0.688287
Target:  5'- uGCCGAcGCGCAGaaaguagaGCccagagucggccgGGCGCGGGCc -3'
miRNA:   3'- -CGGUUcCGCGUCag------CGa------------CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 13101 0.66 0.682331
Target:  5'- aGUCAGGcCGCGGgCGCcGGaccCGCGGGCg -3'
miRNA:   3'- -CGGUUCcGCGUCaGCGaCC---GCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 101161 0.66 0.682331
Target:  5'- gGCUu--GCGCGG-CGCgGcGCGUGGACa -3'
miRNA:   3'- -CGGuucCGCGUCaGCGaC-CGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 75519 0.66 0.682331
Target:  5'- gGCCuuuuaugcgcGGCGCAGcccgCGCgaggcggGGCgggGCGGACg -3'
miRNA:   3'- -CGGuu--------CCGCGUCa---GCGa------CCG---CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 62739 0.66 0.682331
Target:  5'- gGCC--GGCGCGuUC-CUGGCGCGcGCg -3'
miRNA:   3'- -CGGuuCCGCGUcAGcGACCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 98935 0.66 0.682331
Target:  5'- aGCCuccgcgcGGCGCGG-CGCcccaacgGGCccgccGCGGACg -3'
miRNA:   3'- -CGGuu-----CCGCGUCaGCGa------CCG-----CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 56043 0.66 0.682331
Target:  5'- uGCC--GGCGCAcGUCgGCgucGGCGCGcGCg -3'
miRNA:   3'- -CGGuuCCGCGU-CAG-CGa--CCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 52615 0.66 0.682331
Target:  5'- cGCCGgaacAGGaaCGCcGUCGCUGG-GCaGACg -3'
miRNA:   3'- -CGGU----UCC--GCGuCAGCGACCgCGcCUG- -5'
23710 3' -60.7 NC_005261.1 + 17454 0.66 0.682331
Target:  5'- cGCC-GGGCGCGGgaagguggaggcUCGCgccccgcggGGCGCGuGCc -3'
miRNA:   3'- -CGGuUCCGCGUC------------AGCGa--------CCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 11051 0.66 0.682331
Target:  5'- gGCCGGagcGGCGgGG-CGCUGGgccCGCGuGGCu -3'
miRNA:   3'- -CGGUU---CCGCgUCaGCGACC---GCGC-CUG- -5'
23710 3' -60.7 NC_005261.1 + 53429 0.66 0.67636
Target:  5'- cGCCGAGGCGuCGGgcgcguccgcgaugCGCcGGCGCa--- -3'
miRNA:   3'- -CGGUUCCGC-GUCa-------------GCGaCCGCGccug -5'
23710 3' -60.7 NC_005261.1 + 57538 0.66 0.672373
Target:  5'- uGCCAgccgcgcaccccAGGCGCGcUCaGCc-GCGCGGGCu -3'
miRNA:   3'- -CGGU------------UCCGCGUcAG-CGacCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 133276 0.66 0.672373
Target:  5'- cGCCAGcucGGCGCGGgcggccCGCcGGCGCucGCg -3'
miRNA:   3'- -CGGUU---CCGCGUCa-----GCGaCCGCGccUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.