miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 97097 0.66 0.956461
Target:  5'- uGGGccggGGGC-GCCaGCcGGGCCGCGGc -3'
miRNA:   3'- -CCCaa--CUCGuUGG-CGuUCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 55056 0.66 0.956461
Target:  5'- cGGGgccggcGAGCucgGCCGCcgAAGGCaugCGCAGAc -3'
miRNA:   3'- -CCCaa----CUCGu--UGGCG--UUCUG---GCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 3663 0.66 0.956461
Target:  5'- ----gGAGCGcagGCCGCGgccggcAGGCCGCGGc -3'
miRNA:   3'- cccaaCUCGU---UGGCGU------UCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 73223 0.66 0.956461
Target:  5'- aGGGgcGcGGUGGCCGCGAGcGCgaGCAGGu -3'
miRNA:   3'- -CCCaaC-UCGUUGGCGUUC-UGg-CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 11880 0.66 0.956072
Target:  5'- cGGGgcGAGCccgcCCGCAcGcgcgcccGCCGCGGGc -3'
miRNA:   3'- -CCCaaCUCGuu--GGCGUuC-------UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 70176 0.66 0.952464
Target:  5'- aGGGcgcggGAGCGGCCGCuguGGagGCGGGg -3'
miRNA:   3'- -CCCaa---CUCGUUGGCGuu-CUggCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 121775 0.66 0.952464
Target:  5'- cGGUgGGGUGGCCGCGgccggcGGGCUggGCAGGg -3'
miRNA:   3'- cCCAaCUCGUUGGCGU------UCUGG--CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 132673 0.66 0.952464
Target:  5'- uGGGUgcgaggacaagaUGGGCuuCCGCGuGGCCGUg-- -3'
miRNA:   3'- -CCCA------------ACUCGuuGGCGUuCUGGCGucu -5'
23715 3' -53.8 NC_005261.1 + 17640 0.66 0.952464
Target:  5'- -----aAGCGAUCGCGAGGCCGaugaGGAu -3'
miRNA:   3'- cccaacUCGUUGGCGUUCUGGCg---UCU- -5'
23715 3' -53.8 NC_005261.1 + 95644 0.66 0.952464
Target:  5'- uGGgcGAGCGcgacgcgcggcGCCGCGAcGGgCGCGGGu -3'
miRNA:   3'- cCCaaCUCGU-----------UGGCGUU-CUgGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 107267 0.66 0.952464
Target:  5'- cGGGcacGGGCGGgCGCGcaucAGGCgGCAGGc -3'
miRNA:   3'- -CCCaa-CUCGUUgGCGU----UCUGgCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 29032 0.66 0.952464
Target:  5'- aGGGUUGGGgAugacacggggGCCGCcgccGCCGCGGc -3'
miRNA:   3'- -CCCAACUCgU----------UGGCGuuc-UGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 48058 0.66 0.952051
Target:  5'- cGGGgcccGCGGCCcacgccgaguacaGCGAGAccCCGCAGAu -3'
miRNA:   3'- -CCCaacuCGUUGG-------------CGUUCU--GGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 43769 0.66 0.948227
Target:  5'- aGGUgcucgugGGGCGGCgCGCGgagGGcGCCGCGGGu -3'
miRNA:   3'- cCCAa------CUCGUUG-GCGU---UC-UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 70998 0.66 0.948227
Target:  5'- ----cGGGCGGCCGCcAGGCCagcucgccgcGCAGGa -3'
miRNA:   3'- cccaaCUCGUUGGCGuUCUGG----------CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 27471 0.66 0.948227
Target:  5'- cGGGgcGGGCAggcccuccccgGgCGCAccuGGACCGcCAGGu -3'
miRNA:   3'- -CCCaaCUCGU-----------UgGCGU---UCUGGC-GUCU- -5'
23715 3' -53.8 NC_005261.1 + 102302 0.66 0.943748
Target:  5'- cGGGUc--GUAGCCGCGcgccgcGGCCGCGGc -3'
miRNA:   3'- -CCCAacuCGUUGGCGUu-----CUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 129727 0.66 0.943748
Target:  5'- cGGcu--GCAGCgGCAGGGCgGCGGGg -3'
miRNA:   3'- cCCaacuCGUUGgCGUUCUGgCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 119572 0.66 0.943748
Target:  5'- uGGaUGcgcuGCGAgCGCGAGACCGUGGc -3'
miRNA:   3'- cCCaACu---CGUUgGCGUUCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 96958 0.66 0.943748
Target:  5'- cGGcgGGGCAGCCGCcGGGCgcgauucaCGCGGc -3'
miRNA:   3'- cCCaaCUCGUUGGCGuUCUG--------GCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.