miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 3' -66.3 NC_005261.1 + 126061 0.66 0.462567
Target:  5'- uCCGGcGCCagccGCCCGcCGGCcucGGCGGGc -3'
miRNA:   3'- -GGCC-CGGguc-CGGGC-GCCG---UCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 122313 0.66 0.462567
Target:  5'- gCGacGCCCGGGCCgGCGGUcaGGUGGc- -3'
miRNA:   3'- gGCc-CGGGUCCGGgCGCCG--UCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 59001 0.66 0.462567
Target:  5'- gCGGuGCgCCGGGCUCGCccaGCGGCGccgccaGGAa -3'
miRNA:   3'- gGCC-CG-GGUCCGGGCGc--CGUCGC------UCU- -5'
23735 3' -66.3 NC_005261.1 + 58285 0.66 0.462567
Target:  5'- aCGGGgCCGGcGCgCCGgGGgGcGCGGGGa -3'
miRNA:   3'- gGCCCgGGUC-CG-GGCgCCgU-CGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 136444 0.66 0.462567
Target:  5'- gCGGGCgUcgcagGGGCaCGCGGCAGCcccAGAc -3'
miRNA:   3'- gGCCCGgG-----UCCGgGCGCCGUCGc--UCU- -5'
23735 3' -66.3 NC_005261.1 + 78058 0.66 0.462567
Target:  5'- gCGGGCCCGGccCCCGCGcCGGCc--- -3'
miRNA:   3'- gGCCCGGGUCc-GGGCGCcGUCGcucu -5'
23735 3' -66.3 NC_005261.1 + 100130 0.66 0.462567
Target:  5'- aCC-GGCCgCAGccCCCGCucGGcCAGCGAGAa -3'
miRNA:   3'- -GGcCCGG-GUCc-GGGCG--CC-GUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 102780 0.66 0.462567
Target:  5'- cCCGaGGCCUc-GCCC-CGGCcGCGAGc -3'
miRNA:   3'- -GGC-CCGGGucCGGGcGCCGuCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 23947 0.66 0.462567
Target:  5'- gCGGGUUCGGGgUCGuCGGCAcGCGGu- -3'
miRNA:   3'- gGCCCGGGUCCgGGC-GCCGU-CGCUcu -5'
23735 3' -66.3 NC_005261.1 + 90768 0.66 0.462567
Target:  5'- cCCGaGGCCgCcgAGGCCgcUGCGGCGGCcGGc -3'
miRNA:   3'- -GGC-CCGG-G--UCCGG--GCGCCGUCGcUCu -5'
23735 3' -66.3 NC_005261.1 + 39219 0.66 0.462567
Target:  5'- gCCGccauGGCCCucGCgCGCGcCGGCGAGGu -3'
miRNA:   3'- -GGC----CCGGGucCGgGCGCcGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 74242 0.66 0.459962
Target:  5'- gCCGGGCgcgccgaguacgucCCAuucgcgcgcgcGcGUCCGCGGCgGGCGGGGc -3'
miRNA:   3'- -GGCCCG--------------GGU-----------C-CGGGCGCCG-UCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 127900 0.66 0.453914
Target:  5'- gUCGGGCCCGGGCCUG-GGCn------ -3'
miRNA:   3'- -GGCCCGGGUCCGGGCgCCGucgcucu -5'
23735 3' -66.3 NC_005261.1 + 109870 0.66 0.453914
Target:  5'- -gGGGCagCgGGGCCCGCGG--GCGGGc -3'
miRNA:   3'- ggCCCG--GgUCCGGGCGCCguCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 35942 0.66 0.453914
Target:  5'- gCgGGcGCCCAGGCCCGagccCGGCcaGGCc--- -3'
miRNA:   3'- -GgCC-CGGGUCCGGGC----GCCG--UCGcucu -5'
23735 3' -66.3 NC_005261.1 + 47452 0.66 0.453914
Target:  5'- -aGGcGCCC-GGCCCGCuuGC-GCGGGGg -3'
miRNA:   3'- ggCC-CGGGuCCGGGCGc-CGuCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 31166 0.66 0.453914
Target:  5'- cCCGcGCCCA-GCgCCGCGGCgcuGGCGGc- -3'
miRNA:   3'- -GGCcCGGGUcCG-GGCGCCG---UCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 120638 0.66 0.453914
Target:  5'- -gGcGGCCCuGuGCCUGCGGCGcaaggcGCGGGc -3'
miRNA:   3'- ggC-CCGGGuC-CGGGCGCCGU------CGCUCu -5'
23735 3' -66.3 NC_005261.1 + 98131 0.66 0.453914
Target:  5'- gCCGcGGCaCCGGcGgCCGuCGGCGGCaAGGc -3'
miRNA:   3'- -GGC-CCG-GGUC-CgGGC-GCCGUCGcUCU- -5'
23735 3' -66.3 NC_005261.1 + 103133 0.66 0.453914
Target:  5'- cCCGGGUucuCCAGcGCCuCGCGGUaccGGcCGaAGAg -3'
miRNA:   3'- -GGCCCG---GGUC-CGG-GCGCCG---UC-GC-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.