miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 41365 0.71 0.796288
Target:  5'- gCCUCGUGGugaCCGUCaccUGGCuguUGAGCa -3'
miRNA:   3'- -GGAGCAUC---GGCAGcuuGCCGu--ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 17059 0.71 0.796288
Target:  5'- gCUCGcGGCCGUCcuggaagggcGACGGgAUGGGCc -3'
miRNA:   3'- gGAGCaUCGGCAGc---------UUGCCgUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 14096 0.71 0.796288
Target:  5'- aCUCGcGGUCGUCGA--GGCAgacGGGCg -3'
miRNA:   3'- gGAGCaUCGGCAGCUugCCGUa--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 33596 0.71 0.805306
Target:  5'- aCCaggggCGgcGCCGgcgCGGGCGGCG-GGGCc -3'
miRNA:   3'- -GGa----GCauCGGCa--GCUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 50983 0.71 0.805306
Target:  5'- aCCUCucGGCCGaCG-GCGGCgcGUGGGCg -3'
miRNA:   3'- -GGAGcaUCGGCaGCuUGCCG--UACUCG- -5'
23735 5' -53.5 NC_005261.1 + 93826 0.71 0.805306
Target:  5'- aCCgcCGcAGCCGcCGGGCGGCGccgccGAGCa -3'
miRNA:   3'- -GGa-GCaUCGGCaGCUUGCCGUa----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 94855 0.71 0.805306
Target:  5'- gCCUCGgcGCuCG-CGcACGGCccGGGCg -3'
miRNA:   3'- -GGAGCauCG-GCaGCuUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 32477 0.71 0.822855
Target:  5'- aCUCGggcuucccggGGCCGgCGAcgGCGGCAUcGGCg -3'
miRNA:   3'- gGAGCa---------UCGGCaGCU--UGCCGUAcUCG- -5'
23735 5' -53.5 NC_005261.1 + 84951 0.71 0.822855
Target:  5'- uCCUCGgcGGCCGcCGA--GGCGUcGGGCg -3'
miRNA:   3'- -GGAGCa-UCGGCaGCUugCCGUA-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 136981 0.7 0.847836
Target:  5'- gCCUCGUccccgccuGGCagGUCGAucguGCGGCcgGAGa -3'
miRNA:   3'- -GGAGCA--------UCGg-CAGCU----UGCCGuaCUCg -5'
23735 5' -53.5 NC_005261.1 + 16234 0.7 0.855774
Target:  5'- cCCUCGgGGCgGUCGAcgucCGcGCcgGGGCc -3'
miRNA:   3'- -GGAGCaUCGgCAGCUu---GC-CGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 15384 0.7 0.855774
Target:  5'- cCCUCGgcgccGCCGUCGAugccgACGcGCAgaaaguaGAGCc -3'
miRNA:   3'- -GGAGCau---CGGCAGCU-----UGC-CGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 87391 0.7 0.863507
Target:  5'- uCCUCG--GCCGUCGucucGACGGCGccgucgacGGGCg -3'
miRNA:   3'- -GGAGCauCGGCAGC----UUGCCGUa-------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 24921 0.7 0.863507
Target:  5'- cCCUCGgcggcugcAGCCGcCGAGgGGCAggcuGGCa -3'
miRNA:   3'- -GGAGCa-------UCGGCaGCUUgCCGUac--UCG- -5'
23735 5' -53.5 NC_005261.1 + 21728 0.69 0.869541
Target:  5'- gCUUCG-AGCCGaUCGAcacGCGGCugcugcgccugGAGCg -3'
miRNA:   3'- -GGAGCaUCGGC-AGCU---UGCCGua---------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 98180 0.69 0.871028
Target:  5'- uCCUUGgAGCCGcCGGgggcGCGGCGggcagcGGGCg -3'
miRNA:   3'- -GGAGCaUCGGCaGCU----UGCCGUa-----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 60039 0.69 0.871028
Target:  5'- gCCgUCGgcGCCGaCGGcgGCGGCGaaGAGCg -3'
miRNA:   3'- -GG-AGCauCGGCaGCU--UGCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 58967 0.69 0.87833
Target:  5'- gCCUCGgcGCCcgcGUCGAaggccuccacggGCGGCGgugcgccGGGCu -3'
miRNA:   3'- -GGAGCauCGG---CAGCU------------UGCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 12702 0.69 0.88541
Target:  5'- aCCUUGaAGCC--CGAGCGGCucGGGCg -3'
miRNA:   3'- -GGAGCaUCGGcaGCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 118148 0.69 0.892261
Target:  5'- gCUCGcgcagacgcUGGCCGUC--GCGGCG-GGGCu -3'
miRNA:   3'- gGAGC---------AUCGGCAGcuUGCCGUaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.