miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 136981 0.7 0.847836
Target:  5'- gCCUCGUccccgccuGGCagGUCGAucguGCGGCcgGAGa -3'
miRNA:   3'- -GGAGCA--------UCGg-CAGCU----UGCCGuaCUCg -5'
23735 5' -53.5 NC_005261.1 + 136814 0.75 0.586292
Target:  5'- gCUCGUAGCCGUa-GACGGCgcccccgcgcGUGAGg -3'
miRNA:   3'- gGAGCAUCGGCAgcUUGCCG----------UACUCg -5'
23735 5' -53.5 NC_005261.1 + 136439 0.66 0.972403
Target:  5'- cCCUCGcGGgCGUCGcAGgGGCAcGcGGCa -3'
miRNA:   3'- -GGAGCaUCgGCAGC-UUgCCGUaC-UCG- -5'
23735 5' -53.5 NC_005261.1 + 132887 0.73 0.678952
Target:  5'- uCUUCGgcaAGCCGggcgccgCGGGCGGCGccGAGCg -3'
miRNA:   3'- -GGAGCa--UCGGCa------GCUUGCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 131994 0.72 0.768364
Target:  5'- cCUUCGcAGUCG-CGGACGGCGacaacUGGGCc -3'
miRNA:   3'- -GGAGCaUCGGCaGCUUGCCGU-----ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 128865 0.69 0.892261
Target:  5'- gCCUCGUcgcuGCCGaCGAcgaGGCggGGGCc -3'
miRNA:   3'- -GGAGCAu---CGGCaGCUug-CCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 127830 0.72 0.758797
Target:  5'- gCUCGcGGCCG-CGAGCaGCGgacgGGGCg -3'
miRNA:   3'- gGAGCaUCGGCaGCUUGcCGUa---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 127729 0.69 0.89888
Target:  5'- gCCUgGUAGCgGgagcuuGGCGGCggGAGCg -3'
miRNA:   3'- -GGAgCAUCGgCagc---UUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 127363 0.69 0.892261
Target:  5'- cCCgCGUGGCUaggauGUCGuugGCGGCGgcgagGAGCc -3'
miRNA:   3'- -GGaGCAUCGG-----CAGCu--UGCCGUa----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 127332 0.66 0.959598
Target:  5'- cCCgCGggGGCCG--GAGCGGCG-GGGCg -3'
miRNA:   3'- -GGaGCa-UCGGCagCUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 125727 0.66 0.972403
Target:  5'- gCUCGgcuggGGCCGcCGcaaGGgGGCcgGGGCc -3'
miRNA:   3'- gGAGCa----UCGGCaGC---UUgCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 121781 0.68 0.922976
Target:  5'- ---gGUGGCCG-CGGcCGGCGggcUGGGCa -3'
miRNA:   3'- ggagCAUCGGCaGCUuGCCGU---ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 121537 0.73 0.719485
Target:  5'- uCCUCGUcGCUGUCGGAgccgccguccuCGGCGaaGGGCg -3'
miRNA:   3'- -GGAGCAuCGGCAGCUU-----------GCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 120589 0.77 0.505954
Target:  5'- gCgUCGUGGCCGUCGccuGCGGCcucGGCg -3'
miRNA:   3'- -GgAGCAUCGGCAGCu--UGCCGuacUCG- -5'
23735 5' -53.5 NC_005261.1 + 118148 0.69 0.892261
Target:  5'- gCUCGcgcagacgcUGGCCGUC--GCGGCG-GGGCu -3'
miRNA:   3'- gGAGC---------AUCGGCAGcuUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 115969 0.68 0.926795
Target:  5'- aCCUCGUccuccgagguguAGUCGUCGcuGacgagccgcccgagGCGGCcUGAGCc -3'
miRNA:   3'- -GGAGCA------------UCGGCAGC--U--------------UGCCGuACUCG- -5'
23735 5' -53.5 NC_005261.1 + 115386 0.69 0.89888
Target:  5'- gCgUCGUggucuucagcgGGUCGUCGAccgcggGCGGCAgccgGGGCc -3'
miRNA:   3'- -GgAGCA-----------UCGGCAGCU------UGCCGUa---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 112653 0.74 0.648109
Target:  5'- cCUUCGcAGCCGaguaCGAGCGGCugGAGCg -3'
miRNA:   3'- -GGAGCaUCGGCa---GCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 111587 0.66 0.972124
Target:  5'- gCUCGaGGCCGagcacgCGGagugggcGCGGC-UGGGCu -3'
miRNA:   3'- gGAGCaUCGGCa-----GCU-------UGCCGuACUCG- -5'
23735 5' -53.5 NC_005261.1 + 109846 0.66 0.96952
Target:  5'- --gCGU-GCCGUUGGugGCGGCuccuggGGGCa -3'
miRNA:   3'- ggaGCAuCGGCAGCU--UGCCGua----CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.