miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23739 5' -64.5 NC_005261.1 + 5729 0.66 0.44181
Target:  5'- gAGGCCGgcgggagaAGCGCGCGCGGaaGGUGaGgGUu -3'
miRNA:   3'- -UCCGGC--------UCGCGCGUGUC--CCGC-CgCAu -5'
23739 5' -64.5 NC_005261.1 + 127651 0.66 0.44794
Target:  5'- -nGCCgGGGgGCGCGCGGguucggggcgggacGGCGGCGg- -3'
miRNA:   3'- ucCGG-CUCgCGCGUGUC--------------CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 24024 0.66 0.459448
Target:  5'- gGGGCgGAGCGCGgGguucGGGUgGGCGUc -3'
miRNA:   3'- -UCCGgCUCGCGCgUgu--CCCG-CCGCAu -5'
23739 5' -64.5 NC_005261.1 + 83590 0.66 0.495801
Target:  5'- cGGCCGccagcAGCGCGuCGCucuccgccGCGGCGUGg -3'
miRNA:   3'- uCCGGC-----UCGCGC-GUGucc-----CGCCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 98051 0.66 0.44181
Target:  5'- cGGCCGcgGGCgGCGggacCGC-GGGCGGCGg- -3'
miRNA:   3'- uCCGGC--UCG-CGC----GUGuCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 39343 0.66 0.450582
Target:  5'- cGGCCaAGCuGCGCGCGGcGGCagccgccucaucGGCGg- -3'
miRNA:   3'- uCCGGcUCG-CGCGUGUC-CCG------------CCGCau -5'
23739 5' -64.5 NC_005261.1 + 22 0.66 0.44181
Target:  5'- cGGGCCccGCGCGacccCGGGGgGGUGUu -3'
miRNA:   3'- -UCCGGcuCGCGCgu--GUCCCgCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 112700 0.66 0.44181
Target:  5'- gAGGCCGuGCcCGUGCAGGaccUGGCGUu -3'
miRNA:   3'- -UCCGGCuCGcGCGUGUCCc--GCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 134990 0.66 0.44181
Target:  5'- gGGGCCGccGGgGCGCcccuGGcGCGGCGg- -3'
miRNA:   3'- -UCCGGC--UCgCGCGugu-CC-CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 68585 0.66 0.4497
Target:  5'- -cGCCGAgGCGgGCcgcgggaGCGGGGCcgacGGCGUGg -3'
miRNA:   3'- ucCGGCU-CGCgCG-------UGUCCCG----CCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 98250 0.66 0.44181
Target:  5'- cGGCCcGGUGCgGCGCGucaGGCGGCGc- -3'
miRNA:   3'- uCCGGcUCGCG-CGUGUc--CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 127338 0.66 0.450582
Target:  5'- gGGGCCgGAGCGgcgggGCGCuGGGCccGCGUGg -3'
miRNA:   3'- -UCCGG-CUCGCg----CGUGuCCCGc-CGCAU- -5'
23739 5' -64.5 NC_005261.1 + 4584 0.66 0.458557
Target:  5'- cGGCgGGGCGCcccccgGCGcCAGGGCuccccucGGCGUc -3'
miRNA:   3'- uCCGgCUCGCG------CGU-GUCCCG-------CCGCAu -5'
23739 5' -64.5 NC_005261.1 + 48329 0.66 0.450582
Target:  5'- cGGGCuCGGGgGCGCGC---GCGGCGa- -3'
miRNA:   3'- -UCCG-GCUCgCGCGUGuccCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 63582 0.66 0.450582
Target:  5'- uGGGCCcgaaGAGCG-GCGCGGGGCccuguGGCc-- -3'
miRNA:   3'- -UCCGG----CUCGCgCGUGUCCCG-----CCGcau -5'
23739 5' -64.5 NC_005261.1 + 14463 0.66 0.44181
Target:  5'- cGGCgGAGCuCGCGCuGGuccuccaacGCGGUGUAa -3'
miRNA:   3'- uCCGgCUCGcGCGUGuCC---------CGCCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 32148 0.66 0.450582
Target:  5'- gGGGCUcGGCGCGcCGCuGcGGCcGGUGUAc -3'
miRNA:   3'- -UCCGGcUCGCGC-GUGuC-CCG-CCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 63675 0.66 0.450582
Target:  5'- uGGGCgGGuccccGCGCGUcauauACAGGuucuGCGGCGUGu -3'
miRNA:   3'- -UCCGgCU-----CGCGCG-----UGUCC----CGCCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 1914 0.66 0.44882
Target:  5'- cAGGCC-AGCGCGCggcgcacugcgccGCGGGcagcaccGCGGCGc- -3'
miRNA:   3'- -UCCGGcUCGCGCG-------------UGUCC-------CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 98492 0.66 0.450582
Target:  5'- cGGGCuCGGGCGgGUA-AGGuGCcGGCGUAc -3'
miRNA:   3'- -UCCG-GCUCGCgCGUgUCC-CG-CCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.