miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23739 5' -64.5 NC_005261.1 + 60 0.82 0.037167
Target:  5'- gGGGCCGAaaucgGCGCGCGCgGGGGCGGgGUGc -3'
miRNA:   3'- -UCCGGCU-----CGCGCGUG-UCCCGCCgCAU- -5'
23739 5' -64.5 NC_005261.1 + 137743 0.82 0.037167
Target:  5'- gGGGCCGAaaucgGCGCGCGCgGGGGCGGgGUGc -3'
miRNA:   3'- -UCCGGCU-----CGCGCGUG-UCCCGCCgCAU- -5'
23739 5' -64.5 NC_005261.1 + 104066 0.8 0.055047
Target:  5'- cGGCCgcGAGCGCGUccagcucggcggACAGGGCGGCGg- -3'
miRNA:   3'- uCCGG--CUCGCGCG------------UGUCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 118657 0.79 0.061083
Target:  5'- cGGGCCGcGCGCucgggGCugAGGGCGGCGg- -3'
miRNA:   3'- -UCCGGCuCGCG-----CGugUCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 49220 0.79 0.068461
Target:  5'- gAGGCCGgcgcccAGCGCGCGCAGgucggccgccgccgcGGCGGCGUc -3'
miRNA:   3'- -UCCGGC------UCGCGCGUGUC---------------CCGCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 44254 0.78 0.071351
Target:  5'- cGGCCGAcgccGCgGCGCGCGGGGgGGCGg- -3'
miRNA:   3'- uCCGGCU----CG-CGCGUGUCCCgCCGCau -5'
23739 5' -64.5 NC_005261.1 + 13699 0.78 0.07709
Target:  5'- gGGGCgGGGCGgGCugGGGGCGGgGg- -3'
miRNA:   3'- -UCCGgCUCGCgCGugUCCCGCCgCau -5'
23739 5' -64.5 NC_005261.1 + 53107 0.78 0.079099
Target:  5'- cAGcGCCGcggcgcuGCGCGCcgccaACAGGGCGGCGUAc -3'
miRNA:   3'- -UC-CGGCu------CGCGCG-----UGUCCCGCCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 105132 0.78 0.079099
Target:  5'- cGGGCCGccGGCGCGCGCAGGuccucGCGGCu-- -3'
miRNA:   3'- -UCCGGC--UCGCGCGUGUCC-----CGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 71617 0.77 0.092244
Target:  5'- cGGcCCGGGCGCGgGCccGGGCGGCGg- -3'
miRNA:   3'- uCC-GGCUCGCGCgUGu-CCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 56118 0.76 0.102132
Target:  5'- cGGCgGgAGCGCGcCGCAGGGCGGgGg- -3'
miRNA:   3'- uCCGgC-UCGCGC-GUGUCCCGCCgCau -5'
23739 5' -64.5 NC_005261.1 + 105011 0.76 0.107444
Target:  5'- cGGUCGGG-GCGC-CAGGGCGGUGUc -3'
miRNA:   3'- uCCGGCUCgCGCGuGUCCCGCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 77252 0.76 0.113013
Target:  5'- cGGGCUcaaaaGGGCGCGCuCGcGGGCGGCGUc -3'
miRNA:   3'- -UCCGG-----CUCGCGCGuGU-CCCGCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 46226 0.75 0.12497
Target:  5'- aAGGCCgcguggacGAGCGCGuCGCAGGccGCGGCGg- -3'
miRNA:   3'- -UCCGG--------CUCGCGC-GUGUCC--CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 73140 0.75 0.12497
Target:  5'- cGGGCCGGGCuCGCGCcgccaGGCGGCGUu -3'
miRNA:   3'- -UCCGGCUCGcGCGUGuc---CCGCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 54333 0.75 0.12497
Target:  5'- uGGCCGAGCGCGUACAGGucgaUGGCc-- -3'
miRNA:   3'- uCCGGCUCGCGCGUGUCCc---GCCGcau -5'
23739 5' -64.5 NC_005261.1 + 72616 0.75 0.12497
Target:  5'- cGGgCGGGCGgGCGCAgGGGCGGCu-- -3'
miRNA:   3'- uCCgGCUCGCgCGUGU-CCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 58287 0.75 0.13138
Target:  5'- gGGGCCG-GCGCGC-CGGGG-GGCGc- -3'
miRNA:   3'- -UCCGGCuCGCGCGuGUCCCgCCGCau -5'
23739 5' -64.5 NC_005261.1 + 100725 0.75 0.13138
Target:  5'- cGGCCGcgccgcGCGCGCGCGcGGCGGCGc- -3'
miRNA:   3'- uCCGGCu-----CGCGCGUGUcCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 47369 0.74 0.141564
Target:  5'- cGGGCaCcAGCGCGCGCacaaccgucGGGGCGGCGc- -3'
miRNA:   3'- -UCCG-GcUCGCGCGUG---------UCCCGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.