miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23739 5' -64.5 NC_005261.1 + 22 0.66 0.44181
Target:  5'- cGGGCCccGCGCGacccCGGGGgGGUGUu -3'
miRNA:   3'- -UCCGGcuCGCGCgu--GUCCCgCCGCAu -5'
23739 5' -64.5 NC_005261.1 + 60 0.82 0.037167
Target:  5'- gGGGCCGAaaucgGCGCGCGCgGGGGCGGgGUGc -3'
miRNA:   3'- -UCCGGCU-----CGCGCGUG-UCCCGCCgCAU- -5'
23739 5' -64.5 NC_005261.1 + 233 0.68 0.367505
Target:  5'- cGGGCCccgcGAGCGgGCcCGGcugcGGCGGCGg- -3'
miRNA:   3'- -UCCGG----CUCGCgCGuGUC----CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 522 0.74 0.145116
Target:  5'- aGGGCgCGGGCGgGCgggggGCAGGGCGGaCGg- -3'
miRNA:   3'- -UCCG-GCUCGCgCG-----UGUCCCGCC-GCau -5'
23739 5' -64.5 NC_005261.1 + 1013 0.7 0.270033
Target:  5'- gGGGCgGGGgGCgggugggcuuuuGCGgAGGGCGGCGg- -3'
miRNA:   3'- -UCCGgCUCgCG------------CGUgUCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 1395 0.72 0.194486
Target:  5'- -cGCCGGGCGcCGCggccGCGGcGGCGGCGg- -3'
miRNA:   3'- ucCGGCUCGC-GCG----UGUC-CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 1564 0.69 0.315945
Target:  5'- cGGCCGcagcGGCGCGCcgagcccccaGCGGuuGGCGGCGc- -3'
miRNA:   3'- uCCGGC----UCGCGCG----------UGUC--CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 1914 0.66 0.44882
Target:  5'- cAGGCC-AGCGCGCggcgcacugcgccGCGGGcagcaccGCGGCGc- -3'
miRNA:   3'- -UCCGGcUCGCGCG-------------UGUCC-------CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 1983 0.66 0.494876
Target:  5'- cGGCCGGGCcaucgGCGgccaguuCGCGGGGUccacGGCGUc -3'
miRNA:   3'- uCCGGCUCG-----CGC-------GUGUCCCG----CCGCAu -5'
23739 5' -64.5 NC_005261.1 + 2258 0.69 0.302252
Target:  5'- cAGGCCGccGGCGCucguccuCGCcGGGCGGCGc- -3'
miRNA:   3'- -UCCGGC--UCGCGc------GUGuCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 2396 0.71 0.252064
Target:  5'- uGGCggCGAGCGCGCccGCGGGccccgcGCGGCGg- -3'
miRNA:   3'- uCCG--GCUCGCGCG--UGUCC------CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 2499 0.66 0.486587
Target:  5'- cGGGUgguccgCGAGcCGCGCcgcgaccuCGGGGCGGCa-- -3'
miRNA:   3'- -UCCG------GCUC-GCGCGu-------GUCCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 2539 0.72 0.194486
Target:  5'- uAGGCCGccAGCGCcgcgGCGCuGGGCgcgGGCGUGu -3'
miRNA:   3'- -UCCGGC--UCGCG----CGUGuCCCG---CCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 2637 0.68 0.367505
Target:  5'- gGGGCCcAGCacGCGgGCGGGcaGCGGCGg- -3'
miRNA:   3'- -UCCGGcUCG--CGCgUGUCC--CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 2813 0.71 0.234541
Target:  5'- gGGGCCGGGCGgccccaGCccgagcucgggcgGCAGGGCcGGCGg- -3'
miRNA:   3'- -UCCGGCUCGCg-----CG-------------UGUCCCG-CCGCau -5'
23739 5' -64.5 NC_005261.1 + 3416 0.67 0.40689
Target:  5'- cGGGCUgaaGAGCGCGCGgGccagcguccaggcGGGCGcGCGg- -3'
miRNA:   3'- -UCCGG---CUCGCGCGUgU-------------CCCGC-CGCau -5'
23739 5' -64.5 NC_005261.1 + 3535 0.73 0.164124
Target:  5'- cGGCCGccucGGCGCGCagcgcgGCGGGcGCGGCGc- -3'
miRNA:   3'- uCCGGC----UCGCGCG------UGUCC-CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 4383 0.69 0.295579
Target:  5'- -cGCCGaAGCGCaCGCGgccGGGCGGCGg- -3'
miRNA:   3'- ucCGGC-UCGCGcGUGU---CCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 4584 0.66 0.458557
Target:  5'- cGGCgGGGCGCcccccgGCGcCAGGGCuccccucGGCGUc -3'
miRNA:   3'- uCCGgCUCGCG------CGU-GUCCCG-------CCGCAu -5'
23739 5' -64.5 NC_005261.1 + 4836 0.68 0.383261
Target:  5'- cAGGCgGcGGCGUccGCGCcgcagccucaAGGGCGGCGg- -3'
miRNA:   3'- -UCCGgC-UCGCG--CGUG----------UCCCGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.