Results 1 - 20 of 290 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 83590 | 0.66 | 0.495801 |
Target: 5'- cGGCCGccagcAGCGCGuCGCucuccgccGCGGCGUGg -3' miRNA: 3'- uCCGGC-----UCGCGC-GUGucc-----CGCCGCAU- -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 77252 | 0.76 | 0.113013 |
Target: 5'- cGGGCUcaaaaGGGCGCGCuCGcGGGCGGCGUc -3' miRNA: 3'- -UCCGG-----CUCGCGCGuGU-CCCGCCGCAu -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 72616 | 0.75 | 0.12497 |
Target: 5'- cGGgCGGGCGgGCGCAgGGGCGGCu-- -3' miRNA: 3'- uCCgGCUCGCgCGUGU-CCCGCCGcau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 54333 | 0.75 | 0.12497 |
Target: 5'- uGGCCGAGCGCGUACAGGucgaUGGCc-- -3' miRNA: 3'- uCCGGCUCGCGCGUGUCCc---GCCGcau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 73140 | 0.75 | 0.12497 |
Target: 5'- cGGGCCGGGCuCGCGCcgccaGGCGGCGUu -3' miRNA: 3'- -UCCGGCUCGcGCGUGuc---CCGCCGCAu -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 46226 | 0.75 | 0.12497 |
Target: 5'- aAGGCCgcguggacGAGCGCGuCGCAGGccGCGGCGg- -3' miRNA: 3'- -UCCGG--------CUCGCGC-GUGUCC--CGCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 58287 | 0.75 | 0.13138 |
Target: 5'- gGGGCCG-GCGCGC-CGGGG-GGCGc- -3' miRNA: 3'- -UCCGGCuCGCGCGuGUCCCgCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 100725 | 0.75 | 0.13138 |
Target: 5'- cGGCCGcgccgcGCGCGCGCGcGGCGGCGc- -3' miRNA: 3'- uCCGGCu-----CGCGCGUGUcCCGCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 47369 | 0.74 | 0.141564 |
Target: 5'- cGGGCaCcAGCGCGCGCacaaccgucGGGGCGGCGc- -3' miRNA: 3'- -UCCG-GcUCGCGCGUG---------UCCCGCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 105011 | 0.76 | 0.107444 |
Target: 5'- cGGUCGGG-GCGC-CAGGGCGGUGUc -3' miRNA: 3'- uCCGGCUCgCGCGuGUCCCGCCGCAu -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 56118 | 0.76 | 0.102132 |
Target: 5'- cGGCgGgAGCGCGcCGCAGGGCGGgGg- -3' miRNA: 3'- uCCGgC-UCGCGC-GUGUCCCGCCgCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 71617 | 0.77 | 0.092244 |
Target: 5'- cGGcCCGGGCGCGgGCccGGGCGGCGg- -3' miRNA: 3'- uCC-GGCUCGCGCgUGu-CCCGCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 137743 | 0.82 | 0.037167 |
Target: 5'- gGGGCCGAaaucgGCGCGCGCgGGGGCGGgGUGc -3' miRNA: 3'- -UCCGGCU-----CGCGCGUG-UCCCGCCgCAU- -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 104066 | 0.8 | 0.055047 |
Target: 5'- cGGCCgcGAGCGCGUccagcucggcggACAGGGCGGCGg- -3' miRNA: 3'- uCCGG--CUCGCGCG------------UGUCCCGCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 118657 | 0.79 | 0.061083 |
Target: 5'- cGGGCCGcGCGCucgggGCugAGGGCGGCGg- -3' miRNA: 3'- -UCCGGCuCGCG-----CGugUCCCGCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 49220 | 0.79 | 0.068461 |
Target: 5'- gAGGCCGgcgcccAGCGCGCGCAGgucggccgccgccgcGGCGGCGUc -3' miRNA: 3'- -UCCGGC------UCGCGCGUGUC---------------CCGCCGCAu -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 44254 | 0.78 | 0.071351 |
Target: 5'- cGGCCGAcgccGCgGCGCGCGGGGgGGCGg- -3' miRNA: 3'- uCCGGCU----CG-CGCGUGUCCCgCCGCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 13699 | 0.78 | 0.07709 |
Target: 5'- gGGGCgGGGCGgGCugGGGGCGGgGg- -3' miRNA: 3'- -UCCGgCUCGCgCGugUCCCGCCgCau -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 53107 | 0.78 | 0.079099 |
Target: 5'- cAGcGCCGcggcgcuGCGCGCcgccaACAGGGCGGCGUAc -3' miRNA: 3'- -UC-CGGCu------CGCGCG-----UGUCCCGCCGCAU- -5' |
|||||||
23739 | 5' | -64.5 | NC_005261.1 | + | 105132 | 0.78 | 0.079099 |
Target: 5'- cGGGCCGccGGCGCGCGCAGGuccucGCGGCu-- -3' miRNA: 3'- -UCCGGC--UCGCGCGUGUCC-----CGCCGcau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home