miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 109222 0.66 0.955018
Target:  5'- gGCGcGGcacgccGCGCGCUGcAgcgcggcccAGUGCGgGGCCa -3'
miRNA:   3'- -UGUaCC------UGCGCGAC-U---------UCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 49569 0.66 0.955018
Target:  5'- aGCAUGGGCGUgaacacggGCUcGggGcGCGcGGCg -3'
miRNA:   3'- -UGUACCUGCG--------CGA-CuuCaUGCaCCGg -5'
23758 3' -54 NC_005261.1 + 69449 0.66 0.955018
Target:  5'- aGCGcGGACGaGCUGcGGcGCGUcgagGGCCa -3'
miRNA:   3'- -UGUaCCUGCgCGACuUCaUGCA----CCGG- -5'
23758 3' -54 NC_005261.1 + 50374 0.66 0.955018
Target:  5'- cACGUaGcuccGCGCGUcGAAGUACGUcgcgaaGGCCg -3'
miRNA:   3'- -UGUAcC----UGCGCGaCUUCAUGCA------CCGG- -5'
23758 3' -54 NC_005261.1 + 110466 0.66 0.955018
Target:  5'- uGCcUGGGCGgGCUGcucu-CGUGGaCCa -3'
miRNA:   3'- -UGuACCUGCgCGACuucauGCACC-GG- -5'
23758 3' -54 NC_005261.1 + 69225 0.66 0.954223
Target:  5'- aGC-UGuGCGCGCUGggGcgguucgccgagGCGcUGGCCc -3'
miRNA:   3'- -UGuACcUGCGCGACuuCa-----------UGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 23623 0.66 0.950946
Target:  5'- uGCcgGGGCGCgGCgGggGU-CGggcGGCUg -3'
miRNA:   3'- -UGuaCCUGCG-CGaCuuCAuGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 127602 0.66 0.950946
Target:  5'- uUcgGGGcCGCGCUGAAcgcuaGCGgccGGCCg -3'
miRNA:   3'- uGuaCCU-GCGCGACUUca---UGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 68493 0.66 0.950946
Target:  5'- aACcgGGAgugcuuCGCGCUGAugcagGCGUGccuGCCg -3'
miRNA:   3'- -UGuaCCU------GCGCGACUuca--UGCAC---CGG- -5'
23758 3' -54 NC_005261.1 + 109121 0.66 0.946634
Target:  5'- ---aGGGCgGCGgUGucGUGCGcGGCCc -3'
miRNA:   3'- uguaCCUG-CGCgACuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 12327 0.66 0.946634
Target:  5'- ---cGGGCGCGCgcuuGGccgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGCGacu-UCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 44264 0.66 0.946634
Target:  5'- ---cGcGGCGCGCgGggGgGCGgGGCCc -3'
miRNA:   3'- uguaC-CUGCGCGaCuuCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 53870 0.66 0.946634
Target:  5'- aGCGcGGcgcGCGCGCUGucGAGUcgaaGCG-GGCCc -3'
miRNA:   3'- -UGUaCC---UGCGCGAC--UUCA----UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 47578 0.66 0.94619
Target:  5'- cGCAUGGcgcagagccgcgcGCGCGCgagGGAGccgcccccUGCGggggcGGCCg -3'
miRNA:   3'- -UGUACC-------------UGCGCGa--CUUC--------AUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 13679 0.66 0.94208
Target:  5'- gGCGcgGGGCGCGCgggcgUGggGcgggGCG-GGCUg -3'
miRNA:   3'- -UGUa-CCUGCGCG-----ACuuCa---UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 51351 0.66 0.94208
Target:  5'- uGCAccgcUGGGCuguccgGCGC-GGAGUACGcgcaGGCCg -3'
miRNA:   3'- -UGU----ACCUG------CGCGaCUUCAUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 5222 0.66 0.94208
Target:  5'- ---cGGACuCGaUGAGGUcguacaggucgaGCGUGGCCg -3'
miRNA:   3'- uguaCCUGcGCgACUUCA------------UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 114355 0.66 0.93728
Target:  5'- cGCGUGGcCGCGgccGAGUcgGUGGCCg -3'
miRNA:   3'- -UGUACCuGCGCgacUUCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 75881 0.66 0.93728
Target:  5'- cCGUGGGCGCGCgc-AGcgGCGacGCCa -3'
miRNA:   3'- uGUACCUGCGCGacuUCa-UGCacCGG- -5'
23758 3' -54 NC_005261.1 + 29462 0.66 0.93728
Target:  5'- ---gGGACGCGggGAagcAGUACGcGGCg -3'
miRNA:   3'- uguaCCUGCGCgaCU---UCAUGCaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.