miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 31761 0.66 0.601874
Target:  5'- -aGGCGcACGUGUaCCUGCGcGCcgcgGUGCu -3'
miRNA:   3'- ucCCGC-UGCACG-GGACGCcCGa---CACG- -5'
23758 5' -62.6 NC_005261.1 + 131677 0.66 0.601874
Target:  5'- aGGGuGCGACc-GCCCUGCGcGCg--GCg -3'
miRNA:   3'- -UCC-CGCUGcaCGGGACGCcCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 86300 0.66 0.601874
Target:  5'- cAGGGC-ACGUcGCCCUccaGCGuGCUG-GCc -3'
miRNA:   3'- -UCCCGcUGCA-CGGGA---CGCcCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 81428 0.66 0.592023
Target:  5'- -aGGCGGCGUcgucggccGCCCcgcgGCGGGCgccGCc -3'
miRNA:   3'- ucCCGCUGCA--------CGGGa---CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 44967 0.66 0.592023
Target:  5'- cGGGaCGcGCGcgaggGCCCggGCGGGCcgccacagGUGCu -3'
miRNA:   3'- uCCC-GC-UGCa----CGGGa-CGCCCGa-------CACG- -5'
23758 5' -62.6 NC_005261.1 + 12425 0.66 0.592023
Target:  5'- aGGGGCGGCGgagGgCUUGCGGcGUcGgccGCg -3'
miRNA:   3'- -UCCCGCUGCa--CgGGACGCC-CGaCa--CG- -5'
23758 5' -62.6 NC_005261.1 + 27453 0.66 0.582201
Target:  5'- -uGGCGGCGggccGCCCcGCGgGGCgg-GCa -3'
miRNA:   3'- ucCCGCUGCa---CGGGaCGC-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 39861 0.66 0.582201
Target:  5'- cGGGCGcccaggcacACGgccagcagGCCgCgcGCGcGGCUGUGCa -3'
miRNA:   3'- uCCCGC---------UGCa-------CGG-Ga-CGC-CCGACACG- -5'
23758 5' -62.6 NC_005261.1 + 112422 0.66 0.571435
Target:  5'- cGGGCaucuGCGUguacaucgaGCCCuggcacugcgacgUGCGGGCcGUGCu -3'
miRNA:   3'- uCCCGc---UGCA---------CGGG-------------ACGCCCGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 65807 0.66 0.570459
Target:  5'- cGGGuCGGgGUGCCCgggcgGCGGcGCgaagcugcccgaGUGCc -3'
miRNA:   3'- uCCC-GCUgCACGGGa----CGCC-CGa-----------CACG- -5'
23758 5' -62.6 NC_005261.1 + 111609 0.66 0.562662
Target:  5'- uGGGCG-CG-GCUgggCUGCGGcGCcGUGCc -3'
miRNA:   3'- uCCCGCuGCaCGG---GACGCC-CGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 70457 0.66 0.562662
Target:  5'- gAGGGUGuACGUcaGCCCgcgccGCGGGUgc-GCg -3'
miRNA:   3'- -UCCCGC-UGCA--CGGGa----CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 134241 0.66 0.552958
Target:  5'- cGuGGCGcACGcGCCCUGCGcGGCc--GCg -3'
miRNA:   3'- uC-CCGC-UGCaCGGGACGC-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 70864 0.66 0.552958
Target:  5'- cAGGGCGGCc-GCCgUgGCGuGGCcggcgGUGCa -3'
miRNA:   3'- -UCCCGCUGcaCGGgA-CGC-CCGa----CACG- -5'
23758 5' -62.6 NC_005261.1 + 16409 0.66 0.552958
Target:  5'- cGGGCGguGCGggagagGCCCccucgacgGCGGGCg--GCg -3'
miRNA:   3'- uCCCGC--UGCa-----CGGGa-------CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 118377 0.66 0.552958
Target:  5'- uGGGGCGcGCG-GCCCga-GGcGCUG-GCg -3'
miRNA:   3'- -UCCCGC-UGCaCGGGacgCC-CGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 4462 0.66 0.552958
Target:  5'- cAGcGGCGGCG-GCCCgucGCGcGGCgccGCg -3'
miRNA:   3'- -UC-CCGCUGCaCGGGa--CGC-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 134565 0.66 0.55199
Target:  5'- uGGGCGGCGccgcggcUGCgCaggGCGGGcCUG-GCg -3'
miRNA:   3'- uCCCGCUGC-------ACGgGa--CGCCC-GACaCG- -5'
23758 5' -62.6 NC_005261.1 + 97419 0.66 0.55199
Target:  5'- cGGGCG-CGccgggccUGCCCUugggcGCGGGuCUGgGCu -3'
miRNA:   3'- uCCCGCuGC-------ACGGGA-----CGCCC-GACaCG- -5'
23758 5' -62.6 NC_005261.1 + 24396 0.67 0.543305
Target:  5'- -cGGCGGCGgggcgGUCCUGgGGGCUcggauccucgGUuGCg -3'
miRNA:   3'- ucCCGCUGCa----CGGGACgCCCGA----------CA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.