miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 138008 0.73 0.735538
Target:  5'- gGCUGCgGCGgcccgcagcccGGCGCGGCccGGCgGCGg -3'
miRNA:   3'- -CGAUGaUGU-----------UCGCGCUGuaCCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 137972 0.69 0.892309
Target:  5'- gGCUGCgGCGgcGGCuGCGGCGgcGGCUGCGg -3'
miRNA:   3'- -CGAUGaUGU--UCG-CGCUGUa-CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 137936 0.69 0.892309
Target:  5'- gGCUGCgGCGgcGGCuGCGGCGgcGGCUGCGg -3'
miRNA:   3'- -CGAUGaUGU--UCG-CGCUGUa-CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 137050 0.66 0.967165
Target:  5'- gGCggACcgucgGCAGGCGCGGaggcgcgggcaccCAUGGCgGCGc -3'
miRNA:   3'- -CGa-UGa----UGUUCGCGCU-------------GUACCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 136744 0.66 0.970569
Target:  5'- cGCUGCUGCAAGC-CGuCgGUGGUgAgGa -3'
miRNA:   3'- -CGAUGAUGUUCGcGCuG-UACCGgUgC- -5'
23765 5' -52.6 NC_005261.1 + 135644 0.71 0.79397
Target:  5'- cGCUGCUACcuGCGCGgGCGcgGGCgGCc -3'
miRNA:   3'- -CGAUGAUGuuCGCGC-UGUa-CCGgUGc -5'
23765 5' -52.6 NC_005261.1 + 135183 0.76 0.547892
Target:  5'- cGCUGCgGCucGCGCGgaGCAUGGCCgagGCGg -3'
miRNA:   3'- -CGAUGaUGuuCGCGC--UGUACCGG---UGC- -5'
23765 5' -52.6 NC_005261.1 + 134531 0.7 0.870596
Target:  5'- aGCUGCUGgGcGCGCaGACGUGaCCGCc -3'
miRNA:   3'- -CGAUGAUgUuCGCG-CUGUACcGGUGc -5'
23765 5' -52.6 NC_005261.1 + 134447 0.68 0.917859
Target:  5'- gGCUGCUGgugaAGGCGCucuACcUGGCCGCc -3'
miRNA:   3'- -CGAUGAUg---UUCGCGc--UGuACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 134220 0.69 0.899069
Target:  5'- cGCggcgGCcgGC-AGCGuCGGCGUGGCgCACGc -3'
miRNA:   3'- -CGa---UGa-UGuUCGC-GCUGUACCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 134180 0.7 0.8385
Target:  5'- cGCUGCuUGCGgagggccuGGCGCGGCucGGCgCGCGg -3'
miRNA:   3'- -CGAUG-AUGU--------UCGCGCUGuaCCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 133944 0.66 0.970569
Target:  5'- cCUGCgcCAGGCGCGgcGCAUGuucggccuuuGCCGCa -3'
miRNA:   3'- cGAUGauGUUCGCGC--UGUAC----------CGGUGc -5'
23765 5' -52.6 NC_005261.1 + 133888 0.67 0.948619
Target:  5'- uCUGC-GCAAGCccGCGGCGcgcugcUGGCCugGc -3'
miRNA:   3'- cGAUGaUGUUCG--CGCUGU------ACCGGugC- -5'
23765 5' -52.6 NC_005261.1 + 133829 0.72 0.755505
Target:  5'- cGCUGCgcggccGCGuGCGCGcCGUGGCCGgCGc -3'
miRNA:   3'- -CGAUGa-----UGUuCGCGCuGUACCGGU-GC- -5'
23765 5' -52.6 NC_005261.1 + 133650 0.67 0.948619
Target:  5'- cGCUGC-GCGAGCGCuGCGUGcucGCCucCGg -3'
miRNA:   3'- -CGAUGaUGUUCGCGcUGUAC---CGGu-GC- -5'
23765 5' -52.6 NC_005261.1 + 133599 0.67 0.956876
Target:  5'- cGCUGCUcACGGcccaccucGCGCuGGCGcugugGGCCGCGc -3'
miRNA:   3'- -CGAUGA-UGUU--------CGCG-CUGUa----CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 133375 0.67 0.956876
Target:  5'- gGCUGCcUGC--GCGCGGCccacgGGCgCGCGg -3'
miRNA:   3'- -CGAUG-AUGuuCGCGCUGua---CCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 133049 0.66 0.964179
Target:  5'- cGC-ACgUGCu-GCGCGGCGUuGGCgGCGa -3'
miRNA:   3'- -CGaUG-AUGuuCGCGCUGUA-CCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 132938 0.7 0.862897
Target:  5'- uCUACguggucccCGAGCGCugcgccGACGUGGCCGCc -3'
miRNA:   3'- cGAUGau------GUUCGCG------CUGUACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 132643 0.7 0.8385
Target:  5'- -----cGCGGGCGCGGCGgcccuagcGGCCGCGu -3'
miRNA:   3'- cgaugaUGUUCGCGCUGUa-------CCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.