miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 10971 0.66 0.612905
Target:  5'- -gGGccGCCCCgccCCGCgcccgacuggcgcugGUCCuCCGGCu -3'
miRNA:   3'- ggCCucCGGGGa--GGCGa--------------UAGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 97917 0.66 0.611939
Target:  5'- gCCGGGcGuCCCCgcuguacuggCCGCcagCUCCGGCg -3'
miRNA:   3'- -GGCCUcC-GGGGa---------GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 65004 0.66 0.611939
Target:  5'- uCCaGGAGGUCCUUguagaccgCCGUgcaGUCCUCGGg -3'
miRNA:   3'- -GG-CCUCCGGGGA--------GGCGa--UAGGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 12432 0.66 0.611939
Target:  5'- gCGGAGGgCUUgcggcgucggCCGCgucggcgCCCCGGUa -3'
miRNA:   3'- gGCCUCCgGGGa---------GGCGaua----GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 13310 0.66 0.611939
Target:  5'- aCGGGGGCCUCguaCGCagcgCCCUcGCa -3'
miRNA:   3'- gGCCUCCGGGGag-GCGaua-GGGGcCG- -5'
23776 3' -63.4 NC_005261.1 + 11835 0.66 0.611939
Target:  5'- gCGGGGGCCCCgcgggCgCGC-GUUCgCGaGCg -3'
miRNA:   3'- gGCCUCCGGGGa----G-GCGaUAGGgGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 106277 0.66 0.610972
Target:  5'- gCCGGGcGGCCCgUgcaaacgCCGUcgaCCUCGGCg -3'
miRNA:   3'- -GGCCU-CCGGGgA-------GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 33993 0.66 0.60614
Target:  5'- cCCGGAgcugGGCUCCUgCUGC-AUCUgccucgacgugaucaCCGGCg -3'
miRNA:   3'- -GGCCU----CCGGGGA-GGCGaUAGG---------------GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 123571 0.66 0.602278
Target:  5'- aCGccGGCCCCcguacaCCGCUG-CgCCGGCu -3'
miRNA:   3'- gGCcuCCGGGGa-----GGCGAUaGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 132921 0.66 0.602278
Target:  5'- gCGGcGGCUCCUgCC-CUucuacgugGUCCCCGaGCg -3'
miRNA:   3'- gGCCuCCGGGGA-GGcGA--------UAGGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 1993 0.66 0.602278
Target:  5'- aUCGGcGGCCagUUCGCgggGUCCaCGGCg -3'
miRNA:   3'- -GGCCuCCGGggAGGCGa--UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 120665 0.66 0.602278
Target:  5'- gCGGGcGcGCCUgugauCUCgCGCgcgCCCCGGCg -3'
miRNA:   3'- gGCCU-C-CGGG-----GAG-GCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 131572 0.66 0.602278
Target:  5'- cCCGGcuGCCCC-CCGCgacggCCgaGGCc -3'
miRNA:   3'- -GGCCucCGGGGaGGCGaua--GGggCCG- -5'
23776 3' -63.4 NC_005261.1 + 16266 0.66 0.602278
Target:  5'- gCCGG-GGCCgggCUUCgGCUcgCCCgGGg -3'
miRNA:   3'- -GGCCuCCGG---GGAGgCGAuaGGGgCCg -5'
23776 3' -63.4 NC_005261.1 + 49503 0.66 0.602278
Target:  5'- -aGGAGGCCggugaCCUCCGaaaagGUCgCgGGCc -3'
miRNA:   3'- ggCCUCCGG-----GGAGGCga---UAGgGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 34467 0.66 0.602278
Target:  5'- gCCGGGGGCCCCguacCUGCggcgggUgCUGGa -3'
miRNA:   3'- -GGCCUCCGGGGa---GGCGaua---GgGGCCg -5'
23776 3' -63.4 NC_005261.1 + 51912 0.66 0.599383
Target:  5'- cCCGGGcgcgcagcggccgcGGCCUggucCCGCUcGUCgCCGGCg -3'
miRNA:   3'- -GGCCU--------------CCGGGga--GGCGA-UAGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 1212 0.66 0.592637
Target:  5'- gCGGAccCCCCgccgaugCCGCcGUCgCCGGCc -3'
miRNA:   3'- gGCCUccGGGGa------GGCGaUAGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 52832 0.66 0.592637
Target:  5'- uUCGaGGGCCgCCUcgCCGgUGUCCCacguGGCg -3'
miRNA:   3'- -GGCcUCCGG-GGA--GGCgAUAGGGg---CCG- -5'
23776 3' -63.4 NC_005261.1 + 87360 0.66 0.592637
Target:  5'- cUCGGGGcuaGCgCCCaCCGCgcggcagaUGUCCUCGGCc -3'
miRNA:   3'- -GGCCUC---CG-GGGaGGCG--------AUAGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.