miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 5' -50.6 NC_005261.1 + 70347 0.66 0.994822
Target:  5'- -aGCGGg--CCGGggaccggGAGGcggcGCGCCUCCa -3'
miRNA:   3'- gaCGCCaaaGGUUa------UUUC----UGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 69770 0.66 0.994822
Target:  5'- -gGCGGcg-CCGGggacuGAGcCGCUCCCg -3'
miRNA:   3'- gaCGCCaaaGGUUau---UUCuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 23430 0.66 0.994822
Target:  5'- gCUGCGcGUcggggcgCCAGUccucagggcaGAAGGCGCCaggCCCg -3'
miRNA:   3'- -GACGC-CAaa-----GGUUA----------UUUCUGCGG---GGG- -5'
23776 5' -50.6 NC_005261.1 + 118499 0.66 0.994822
Target:  5'- gCUGCGGacccuggcgCCGcucGgcGAGGCGCCCUg -3'
miRNA:   3'- -GACGCCaaa------GGU---UauUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 97802 0.66 0.994822
Target:  5'- -gGCGaccgUCCGcc---GGCGCCCCCg -3'
miRNA:   3'- gaCGCcaa-AGGUuauuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 81364 0.66 0.994822
Target:  5'- uUGCGGggggcgCCGGgcucgcUGGGGGCGCCgggcuCCCg -3'
miRNA:   3'- gACGCCaaa---GGUU------AUUUCUGCGG-----GGG- -5'
23776 5' -50.6 NC_005261.1 + 134986 0.66 0.994822
Target:  5'- -gGaCGGgg-CCGcc-GGGGCGCCCCUg -3'
miRNA:   3'- gaC-GCCaaaGGUuauUUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 122200 0.66 0.994822
Target:  5'- cCUGCGuGUugcucUUCCAAgacGAcucuguccAGGCGgCCCCg -3'
miRNA:   3'- -GACGC-CA-----AAGGUUa--UU--------UCUGCgGGGG- -5'
23776 5' -50.6 NC_005261.1 + 86354 0.66 0.993983
Target:  5'- uUGCGc---CCGGcGAAGGCGCCCgCg -3'
miRNA:   3'- gACGCcaaaGGUUaUUUCUGCGGGgG- -5'
23776 5' -50.6 NC_005261.1 + 95008 0.66 0.993037
Target:  5'- cCUGCGGggcgggCU-AUAAAGcCGCCgCCg -3'
miRNA:   3'- -GACGCCaaa---GGuUAUUUCuGCGGgGG- -5'
23776 5' -50.6 NC_005261.1 + 20506 0.66 0.993037
Target:  5'- -aGCGGg--CCGGcUAGGGACGCCg-- -3'
miRNA:   3'- gaCGCCaaaGGUU-AUUUCUGCGGggg -5'
23776 5' -50.6 NC_005261.1 + 105311 0.66 0.992521
Target:  5'- -cGCGGggUCCucgcacuccgccccGGCGCCgCCCa -3'
miRNA:   3'- gaCGCCaaAGGuuauuu--------CUGCGG-GGG- -5'
23776 5' -50.6 NC_005261.1 + 18014 0.66 0.991976
Target:  5'- cCUGCGGg-UCCccgcuAG-CGCUCCCg -3'
miRNA:   3'- -GACGCCaaAGGuuauuUCuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 4526 0.66 0.991976
Target:  5'- -cGCGGgcgCCGcggcGAGGGCGCCgggCCCu -3'
miRNA:   3'- gaCGCCaaaGGUua--UUUCUGCGG---GGG- -5'
23776 5' -50.6 NC_005261.1 + 123280 0.66 0.991976
Target:  5'- gUGCGGguggUCCGcca---GCGCCUCCg -3'
miRNA:   3'- gACGCCaa--AGGUuauuucUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 97017 0.66 0.991976
Target:  5'- -gGCGGg--CCGuc--GGGCGCgCCCg -3'
miRNA:   3'- gaCGCCaaaGGUuauuUCUGCGgGGG- -5'
23776 5' -50.6 NC_005261.1 + 126512 0.66 0.991976
Target:  5'- -gGCGGUcugCCu----GGGCGCCCgCg -3'
miRNA:   3'- gaCGCCAaa-GGuuauuUCUGCGGGgG- -5'
23776 5' -50.6 NC_005261.1 + 4972 0.66 0.99128
Target:  5'- -cGCGGcgUCCucu-GGGGCccggagggcgccgagGCCCCCg -3'
miRNA:   3'- gaCGCCaaAGGuuauUUCUG---------------CGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 6662 0.66 0.99128
Target:  5'- aCUGgGGcUUCCugcuucc-CGCCCCCa -3'
miRNA:   3'- -GACgCCaAAGGuuauuucuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 40858 0.66 0.990791
Target:  5'- -gGCGcg-UCCGcgAAGGcCGCCCCg -3'
miRNA:   3'- gaCGCcaaAGGUuaUUUCuGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.