miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 3' -55 NC_005261.1 + 137812 0.68 0.893336
Target:  5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3'
miRNA:   3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5'
23777 3' -55 NC_005261.1 + 135077 0.67 0.899832
Target:  5'- uUCCgGCGgcggGCUCG-CGgcccGGCGGCGGa -3'
miRNA:   3'- -AGG-CGUa---UGAGCaGCaga-CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 129984 0.68 0.878963
Target:  5'- gUCgCGCAUGCgcugggCGuccuguaugugcuUCGUCacGACGGCGGu -3'
miRNA:   3'- -AG-GCGUAUGa-----GC-------------AGCAGa-CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 128779 0.72 0.692913
Target:  5'- aCUGCGcGC-CGUUGUCUGggcgcccgggcccGCGGCGGg -3'
miRNA:   3'- aGGCGUaUGaGCAGCAGAC-------------UGCCGCC- -5'
23777 3' -55 NC_005261.1 + 127363 0.73 0.612747
Target:  5'- cCCGCGUgGCUaggaUGUCG-UUGGCGGCGGc -3'
miRNA:   3'- aGGCGUA-UGA----GCAGCaGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 123707 0.66 0.94338
Target:  5'- gCCGCGUACUCGgccaucagcagCGUCgucGCGGUc- -3'
miRNA:   3'- aGGCGUAUGAGCa----------GCAGac-UGCCGcc -5'
23777 3' -55 NC_005261.1 + 122607 0.67 0.912131
Target:  5'- gCCGCGUugUCGUgccUGUgcUUGAaCGGCGa -3'
miRNA:   3'- aGGCGUAugAGCA---GCA--GACU-GCCGCc -5'
23777 3' -55 NC_005261.1 + 118660 0.72 0.693917
Target:  5'- gCCGCGcGCUCGggG-CUGAgGGCGGc -3'
miRNA:   3'- aGGCGUaUGAGCagCaGACUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 118239 0.68 0.879669
Target:  5'- gCCGCGgcCUaCGcCGUCUG-CGGCGu -3'
miRNA:   3'- aGGCGUauGA-GCaGCAGACuGCCGCc -5'
23777 3' -55 NC_005261.1 + 118167 0.65 0.95192
Target:  5'- gUCGCGgcgggGCUUGcCGUCUGgGCcGCGGg -3'
miRNA:   3'- aGGCGUa----UGAGCaGCAGAC-UGcCGCC- -5'
23777 3' -55 NC_005261.1 + 118077 0.72 0.703923
Target:  5'- gCCGCAgccgcGCUCGUCuG-CUGGCGGCc- -3'
miRNA:   3'- aGGCGUa----UGAGCAG-CaGACUGCCGcc -5'
23777 3' -55 NC_005261.1 + 115977 0.67 0.91793
Target:  5'- cUCCGagguGUAgUCGUCG-CUGACgagccgcccgaGGCGGc -3'
miRNA:   3'- -AGGCg---UAUgAGCAGCaGACUG-----------CCGCC- -5'
23777 3' -55 NC_005261.1 + 113386 0.67 0.91793
Target:  5'- aCCGUGUcCUCGUCGcaggUGACGGaGGg -3'
miRNA:   3'- aGGCGUAuGAGCAGCag--ACUGCCgCC- -5'
23777 3' -55 NC_005261.1 + 112736 0.66 0.947765
Target:  5'- gUCCGCAgcaUCGUCa--UGACGG-GGa -3'
miRNA:   3'- -AGGCGUaugAGCAGcagACUGCCgCC- -5'
23777 3' -55 NC_005261.1 + 108672 0.67 0.91793
Target:  5'- gUCGCGUcCUCGUCGUCcGGCu-CGGg -3'
miRNA:   3'- aGGCGUAuGAGCAGCAGaCUGccGCC- -5'
23777 3' -55 NC_005261.1 + 107346 0.71 0.713868
Target:  5'- cUCCGCGuUGCggaccugCGUCGUC-GugGGCGc -3'
miRNA:   3'- -AGGCGU-AUGa------GCAGCAGaCugCCGCc -5'
23777 3' -55 NC_005261.1 + 104179 0.72 0.67376
Target:  5'- gCCGCGcGCggGUCGUCgggcggGACGGCGu -3'
miRNA:   3'- aGGCGUaUGagCAGCAGa-----CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 104075 0.66 0.928819
Target:  5'- -gCGCGUccaGCUCGgCGgacagGGCGGCGGc -3'
miRNA:   3'- agGCGUA---UGAGCaGCaga--CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 103492 0.68 0.86513
Target:  5'- -gCGCA-AgaCGUCGUCggcgccgcgGACGGCGGc -3'
miRNA:   3'- agGCGUaUgaGCAGCAGa--------CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 102337 0.68 0.893336
Target:  5'- gCCGCGccaGCUCGgccgCGUC-GAaGGCGGa -3'
miRNA:   3'- aGGCGUa--UGAGCa---GCAGaCUgCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.