miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 103000 0.66 0.338938
Target:  5'- gGCGGCCgCCaCGCgCUCCGCGuGGCu-- -3'
miRNA:   3'- -UGCCGGaGGgGCG-GGGGCGC-CCGcug -5'
23780 3' -69.5 NC_005261.1 + 22627 0.66 0.338938
Target:  5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3'
miRNA:   3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 117732 0.66 0.338938
Target:  5'- aGCGGCCgcgcgcuggcgCCgCCGCCCCCaac-GCGACu -3'
miRNA:   3'- -UGCCGGa----------GG-GGCGGGGGcgccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 28000 0.66 0.338938
Target:  5'- cCGGCCUCUCCGCgaaagggggCCgGCGGG-GAg -3'
miRNA:   3'- uGCCGGAGGGGCGg--------GGgCGCCCgCUg -5'
23780 3' -69.5 NC_005261.1 + 64922 0.66 0.338938
Target:  5'- cGCGGCgugcuccugCUCgCCGCCCaggggCGCGuGCGGCa -3'
miRNA:   3'- -UGCCG---------GAGgGGCGGGg----GCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 2946 0.66 0.338938
Target:  5'- cGCGGCCgggCUCCGgCCCgGacuaGGGCccgGGCu -3'
miRNA:   3'- -UGCCGGa--GGGGCgGGGgCg---CCCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 3383 0.66 0.338938
Target:  5'- cGCGGCCgccagCCgCGCCggcacuuccgCCgGCGGGCuGAa -3'
miRNA:   3'- -UGCCGGa----GGgGCGG----------GGgCGCCCG-CUg -5'
23780 3' -69.5 NC_005261.1 + 87937 0.66 0.338938
Target:  5'- -gGGCCUggagccgcgCgCCGCCacggCCCGCcGGCGGCg -3'
miRNA:   3'- ugCCGGA---------GgGGCGG----GGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 12338 0.66 0.338938
Target:  5'- uUGGCCggcgcggCCGCCgCCGCG-GCGGCa -3'
miRNA:   3'- uGCCGGagg----GGCGGgGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 77149 0.66 0.338938
Target:  5'- cACcGUCUCgCgCCGCCgCCGCGaGGCGGg -3'
miRNA:   3'- -UGcCGGAG-G-GGCGGgGGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 943 0.66 0.338237
Target:  5'- -gGGCCUCCCUcuccucccuccgaGCCCguagagCgGCGGGCcGCg -3'
miRNA:   3'- ugCCGGAGGGG-------------CGGG------GgCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 69601 0.66 0.33198
Target:  5'- cACGGCCUUcgaccgcgcgCCCGCCgCCCGgCacGGCGuGCg -3'
miRNA:   3'- -UGCCGGAG----------GGGCGG-GGGC-Gc-CCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 72408 0.66 0.33198
Target:  5'- cCGcGCgUCCCCGCCCuuGCGcucGCcGCg -3'
miRNA:   3'- uGC-CGgAGGGGCGGGggCGCc--CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 16212 0.66 0.33198
Target:  5'- gAUGGCCUCgaggcucggCCaGCCCUCG-GGGCGGu -3'
miRNA:   3'- -UGCCGGAG---------GGgCGGGGGCgCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 77702 0.66 0.33198
Target:  5'- gACGGCCcccucgaCCgCCGCCCCCcaGCcaaGCGGCg -3'
miRNA:   3'- -UGCCGGa------GG-GGCGGGGG--CGcc-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 120375 0.66 0.33198
Target:  5'- gACGGCg-CCgCGCCCUCGCGcaccgagcaGaGCGGCg -3'
miRNA:   3'- -UGCCGgaGGgGCGGGGGCGC---------C-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 56423 0.66 0.33198
Target:  5'- cGCGGCgcaCCCGCCUgCG-GaGGCGGCg -3'
miRNA:   3'- -UGCCGgagGGGCGGGgGCgC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 125294 0.66 0.33198
Target:  5'- -aGGCCgcgggCgCCGgaCCCGCGGGCG-Cu -3'
miRNA:   3'- ugCCGGa----GgGGCggGGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 106334 0.66 0.33198
Target:  5'- cACGGCC-CCgccgccgcguCCGCCCCCGCcgccGcGCuGACg -3'
miRNA:   3'- -UGCCGGaGG----------GGCGGGGGCGc---C-CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 93701 0.66 0.33198
Target:  5'- gGCGGgugccucuuCCUCCUCGUCgUCGUcGGCGGCg -3'
miRNA:   3'- -UGCC---------GGAGGGGCGGgGGCGcCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.