miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 137757 0.73 0.374634
Target:  5'- cGCGCGCGGGGgcgGGGUGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCGUCCU---UCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 137036 0.68 0.629303
Target:  5'- cGGCGuCGguGGAGGGCGgaCCGucggcagGCGCg -3'
miRNA:   3'- -CUGU-GCguCCUUCCGC--GGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 136556 0.69 0.548399
Target:  5'- aGCugGUGGGGgcagaAGGCGCgGGUGgGCg -3'
miRNA:   3'- cUGugCGUCCU-----UCCGCGgCUACgCGa -5'
23794 3' -58.8 NC_005261.1 + 136479 0.66 0.748489
Target:  5'- cGCGCGCGGGcAGcagcgagcagcucGGCGCCGAcGCcuGCUc -3'
miRNA:   3'- cUGUGCGUCC-UU-------------CCGCGGCUaCG--CGA- -5'
23794 3' -58.8 NC_005261.1 + 135210 0.67 0.700287
Target:  5'- aGGCgGCGCA-GAGGGCcacgGCCGA-GCGCg -3'
miRNA:   3'- -CUG-UGCGUcCUUCCG----CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 134971 0.68 0.649695
Target:  5'- cGACGCagacgGCgAGGAcgGGGcCGCCGggGCGCc -3'
miRNA:   3'- -CUGUG-----CG-UCCU--UCC-GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 134546 0.66 0.749451
Target:  5'- aGACGugaccgccccuUGCuGGgcGGCGCCGcggcUGCGCa -3'
miRNA:   3'- -CUGU-----------GCGuCCuuCCGCGGCu---ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 134365 0.7 0.49945
Target:  5'- cGCGCGgGGGgcGGCGCCGcugGCGaCg -3'
miRNA:   3'- cUGUGCgUCCuuCCGCGGCua-CGC-Ga -5'
23794 3' -58.8 NC_005261.1 + 134208 0.68 0.608918
Target:  5'- cGGCGCGCGGGucgcGGCGgCCGGcaGCGUc -3'
miRNA:   3'- -CUGUGCGUCCuu--CCGC-GGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 133340 0.67 0.690247
Target:  5'- cGGCACGCGcGcgcGGCGCUGccGCGCa -3'
miRNA:   3'- -CUGUGCGUcCuu-CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 133265 0.66 0.730029
Target:  5'- cGGCGCGCgAGuaccAGGGCGCCG--GCGCc -3'
miRNA:   3'- -CUGUGCG-UCc---UUCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 132900 0.71 0.471025
Target:  5'- gGGCGcCGCGGGc-GGCGCCGAgcgGCgGCUc -3'
miRNA:   3'- -CUGU-GCGUCCuuCCGCGGCUa--CG-CGA- -5'
23794 3' -58.8 NC_005261.1 + 131932 0.68 0.639502
Target:  5'- cGCGCGCGGGAccgcGGUGCCc--GCGCc -3'
miRNA:   3'- cUGUGCGUCCUu---CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 131755 0.7 0.509095
Target:  5'- cGGCACGCcGGccGGCGCgGcggGCGCg -3'
miRNA:   3'- -CUGUGCGuCCuuCCGCGgCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 130854 0.66 0.759013
Target:  5'- cGCGCGCGcccGGccGGGCGCCGcgGC-CUg -3'
miRNA:   3'- cUGUGCGU---CCu-UCCGCGGCuaCGcGA- -5'
23794 3' -58.8 NC_005261.1 + 130633 0.7 0.509095
Target:  5'- aGCGCGCGGGgcGcGCgugcgcucGCCGAcGCGCUg -3'
miRNA:   3'- cUGUGCGUCCuuC-CG--------CGGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 130512 0.67 0.720187
Target:  5'- cGugGCGCAGGc--GCugGCCGAaGCGCg -3'
miRNA:   3'- -CugUGCGUCCuucCG--CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 127777 0.69 0.562387
Target:  5'- aGACGCccggcugcucgagcgGCGGGccGGCGCCGcgGCGg- -3'
miRNA:   3'- -CUGUG---------------CGUCCuuCCGCGGCuaCGCga -5'
23794 3' -58.8 NC_005261.1 + 127634 0.76 0.236322
Target:  5'- gGACGCGaCGGcGgcGGCGCCGGgggGCGCg -3'
miRNA:   3'- -CUGUGC-GUC-CuuCCGCGGCUa--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 126939 0.7 0.509095
Target:  5'- --aGCGCGGccaGGGGCGCCGG-GCGCg -3'
miRNA:   3'- cugUGCGUCc--UUCCGCGGCUaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.