miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 68560 0.66 0.63572
Target:  5'- uGCGCGGgcucuUUGaGCGCgucgccGCCGAgGCGGGc -3'
miRNA:   3'- -CGCGUC-----AGC-CGCGac----CGGCUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68707 0.66 0.586795
Target:  5'- aCGaCGG-CGGCGCcGGCCcucACGCGGc -3'
miRNA:   3'- cGC-GUCaGCCGCGaCCGGc--UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 49108 0.66 0.595569
Target:  5'- cGCGCAGcagcuccUCGaGCGC-GGCgGGCG-GGAc -3'
miRNA:   3'- -CGCGUC-------AGC-CGCGaCCGgCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 120942 0.66 0.586795
Target:  5'- gGCGCGGgaaGGUGgaGGCuCGcgcccCGCGGGg -3'
miRNA:   3'- -CGCGUCag-CCGCgaCCG-GCu----GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 3917 0.66 0.590692
Target:  5'- cGCGCcGcCGGCGCcGGCCuccggguaggccaugGGCGCGu- -3'
miRNA:   3'- -CGCGuCaGCCGCGaCCGG---------------CUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 116697 0.66 0.586795
Target:  5'- aGCGCcucgcucaUCGGCcgccaGCUGGCCGACGUc-- -3'
miRNA:   3'- -CGCGuc------AGCCG-----CGACCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 80860 0.66 0.586795
Target:  5'- cGCGCAccccaGGCGCgcucaGCCG-CGCGGGc -3'
miRNA:   3'- -CGCGUcag--CCGCGac---CGGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 89194 0.66 0.586795
Target:  5'- cCGCucgCgGGCGCcgaGGCCGACGCGuGGc -3'
miRNA:   3'- cGCGucaG-CCGCGa--CCGGCUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 100504 0.66 0.586795
Target:  5'- cGUGCcGUCGGCGUccagguaGCCG-CGCGGc -3'
miRNA:   3'- -CGCGuCAGCCGCGac-----CGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 12069 0.66 0.586795
Target:  5'- gGUGCGGcagCGGCGUccGcGCCGGgGCGGc -3'
miRNA:   3'- -CGCGUCa--GCCGCGa-C-CGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 34384 0.66 0.596545
Target:  5'- cGCGCAGacgCGGCGCaGGaguuuaUCGAC-CGGGu -3'
miRNA:   3'- -CGCGUCa--GCCGCGaCC------GGCUGcGCCU- -5'
23798 3' -62.5 NC_005261.1 + 75827 0.66 0.595569
Target:  5'- gGCGCGGcCgcgcccggggaggGGCGCgcgGcGCCGACgGCGGc -3'
miRNA:   3'- -CGCGUCaG-------------CCGCGa--C-CGGCUG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 76716 0.66 0.596545
Target:  5'- gGCGUcGUCaacugcccGCaGCUGGCCGAcgugcuCGCGGAc -3'
miRNA:   3'- -CGCGuCAGc-------CG-CGACCGGCU------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 2744 0.66 0.596545
Target:  5'- uGCGCcG-CGGCG--GGCCGuCGCGGc -3'
miRNA:   3'- -CGCGuCaGCCGCgaCCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 74859 0.66 0.596545
Target:  5'- cGCGcCGGgCGGaGgaGGCgGACGCGGc -3'
miRNA:   3'- -CGC-GUCaGCCgCgaCCGgCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 74814 0.66 0.586795
Target:  5'- cGCGUGG-CGGaGgUGGCCGccgugcuCGCGGAc -3'
miRNA:   3'- -CGCGUCaGCCgCgACCGGCu------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 94847 0.66 0.585822
Target:  5'- cGCGCcuGGccUCGGCGCUcgcgcacGGCCcGgGCGGGc -3'
miRNA:   3'- -CGCG--UC--AGCCGCGA-------CCGGcUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 81760 0.66 0.586795
Target:  5'- cGCGaAGaCGGCGCgGGCCaggacgagcuCGCGGAu -3'
miRNA:   3'- -CGCgUCaGCCGCGaCCGGcu--------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 3428 0.66 0.593617
Target:  5'- cGCGCGGgccagcguccaggcgGGCGCgcgGGCCGcCGCGc- -3'
miRNA:   3'- -CGCGUCag-------------CCGCGa--CCGGCuGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 115536 0.66 0.589717
Target:  5'- aGCGCAGcaUCGGCgGCUGGugcagguCCGuguggcagcacacgaACGCGGc -3'
miRNA:   3'- -CGCGUC--AGCCG-CGACC-------GGC---------------UGCGCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.