miRNA display CGI


Results 21 - 40 of 320 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 93504 0.66 0.596545
Target:  5'- cGCGCGaaccgCGGCGCcguguUGGCCG-CGaGGAa -3'
miRNA:   3'- -CGCGUca---GCCGCG-----ACCGGCuGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 58278 0.66 0.606319
Target:  5'- cGCGCucacggGGcCGGCGCgccGGggGGCGCGGGg -3'
miRNA:   3'- -CGCG------UCaGCCGCGa--CCggCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 107949 0.66 0.61611
Target:  5'- aCGUAGUcCGuGCGCggccgcggGGCCaugcaGugGCGGAu -3'
miRNA:   3'- cGCGUCA-GC-CGCGa-------CCGG-----CugCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 1567 0.66 0.610234
Target:  5'- cCGCAG-CGGCGCgccgagcccccagcGGUuggCGGCGCGGu -3'
miRNA:   3'- cGCGUCaGCCGCGa-------------CCG---GCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 14459 0.66 0.586795
Target:  5'- cGCGCGG-CGgagcucGCGCUGGUCcuccaACGCGGu -3'
miRNA:   3'- -CGCGUCaGC------CGCGACCGGc----UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 119625 0.66 0.596545
Target:  5'- cGUGCAcugCGGCG-UGGCCGACaacgccaccgGCGGc -3'
miRNA:   3'- -CGCGUca-GCCGCgACCGGCUG----------CGCCu -5'
23798 3' -62.5 NC_005261.1 + 50826 0.66 0.606319
Target:  5'- cGCGCGGcUUGGCGCcgcGaGCUGGCGCc-- -3'
miRNA:   3'- -CGCGUC-AGCCGCGa--C-CGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 68707 0.66 0.586795
Target:  5'- aCGaCGG-CGGCGCcGGCCcucACGCGGc -3'
miRNA:   3'- cGC-GUCaGCCGCGaCCGGc--UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 120942 0.66 0.586795
Target:  5'- gGCGCGGgaaGGUGgaGGCuCGcgcccCGCGGGg -3'
miRNA:   3'- -CGCGUCag-CCGCgaCCG-GCu----GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 74859 0.66 0.596545
Target:  5'- cGCGcCGGgCGGaGgaGGCgGACGCGGc -3'
miRNA:   3'- -CGC-GUCaGCCgCgaCCGgCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 116697 0.66 0.586795
Target:  5'- aGCGCcucgcucaUCGGCcgccaGCUGGCCGACGUc-- -3'
miRNA:   3'- -CGCGuc------AGCCG-----CGACCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 74814 0.66 0.586795
Target:  5'- cGCGUGG-CGGaGgUGGCCGccgugcuCGCGGAc -3'
miRNA:   3'- -CGCGUCaGCCgCgACCGGCu------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 76716 0.66 0.596545
Target:  5'- gGCGUcGUCaacugcccGCaGCUGGCCGAcgugcuCGCGGAc -3'
miRNA:   3'- -CGCGuCAGc-------CG-CGACCGGCU------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68330 0.66 0.606319
Target:  5'- cGUGcCGGUCGGCGaccccuacCUGGCCGAgUGCu-- -3'
miRNA:   3'- -CGC-GUCAGCCGC--------GACCGGCU-GCGccu -5'
23798 3' -62.5 NC_005261.1 + 111935 0.66 0.606319
Target:  5'- cUGCAGUCGGCGCUGaa-GuACGaGGAg -3'
miRNA:   3'- cGCGUCAGCCGCGACcggC-UGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 100504 0.66 0.586795
Target:  5'- cGUGCcGUCGGCGUccagguaGCCG-CGCGGc -3'
miRNA:   3'- -CGCGuCAGCCGCGac-----CGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 34384 0.66 0.596545
Target:  5'- cGCGCAGacgCGGCGCaGGaguuuaUCGAC-CGGGu -3'
miRNA:   3'- -CGCGUCa--GCCGCGaCC------GGCUGcGCCU- -5'
23798 3' -62.5 NC_005261.1 + 2744 0.66 0.596545
Target:  5'- uGCGCcG-CGGCG--GGCCGuCGCGGc -3'
miRNA:   3'- -CGCGuCaGCCGCgaCCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 48670 0.66 0.606319
Target:  5'- cGCGCGGcaaCGGCGacuacgGGCC--CGCGGGc -3'
miRNA:   3'- -CGCGUCa--GCCGCga----CCGGcuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68560 0.66 0.63572
Target:  5'- uGCGCGGgcucuUUGaGCGCgucgccGCCGAgGCGGGc -3'
miRNA:   3'- -CGCGUC-----AGC-CGCGac----CGGCUgCGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.