miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 3917 0.66 0.590692
Target:  5'- cGCGCcGcCGGCGCcGGCCuccggguaggccaugGGCGCGu- -3'
miRNA:   3'- -CGCGuCaGCCGCGaCCGG---------------CUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 4315 0.68 0.473677
Target:  5'- cGCGUAG-C-GCGC-GGCCGccuCGCGGAu -3'
miRNA:   3'- -CGCGUCaGcCGCGaCCGGCu--GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 4479 0.69 0.429785
Target:  5'- cGCGCGGcgccgCGGCGUa-GCCuGCGCGGGc -3'
miRNA:   3'- -CGCGUCa----GCCGCGacCGGcUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 5338 0.68 0.482725
Target:  5'- gGCGCgGGUCGGCcagccgGCUGGUCG--GUGGAu -3'
miRNA:   3'- -CGCG-UCAGCCG------CGACCGGCugCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 12069 0.66 0.586795
Target:  5'- gGUGCGGcagCGGCGUccGcGCCGGgGCGGc -3'
miRNA:   3'- -CGCGUCa--GCCGCGa-C-CGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 12316 0.79 0.096962
Target:  5'- cGCGUAGcCGGCGggcgcgcgcUUGGCCGGCGCGGc -3'
miRNA:   3'- -CGCGUCaGCCGC---------GACCGGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 12642 0.74 0.217941
Target:  5'- gGCGCGGUCuGGgGCcGcGCCGGCGCGa- -3'
miRNA:   3'- -CGCGUCAG-CCgCGaC-CGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 13350 0.75 0.193578
Target:  5'- -aGCGGUCGGCGgaGGCUGG-GCGGc -3'
miRNA:   3'- cgCGUCAGCCGCgaCCGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 13679 0.68 0.51035
Target:  5'- gGCGCGG--GGCGCgcgGGCgUGGgGCGGGg -3'
miRNA:   3'- -CGCGUCagCCGCGa--CCG-GCUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 14347 0.66 0.63572
Target:  5'- aGCaGCAG-CGGCaGCagccgcGGCCGGgGCGGc -3'
miRNA:   3'- -CG-CGUCaGCCG-CGa-----CCGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 14459 0.66 0.586795
Target:  5'- cGCGCGG-CGgagcucGCGCUGGUCcuccaACGCGGu -3'
miRNA:   3'- -CGCGUCaGC------CGCGACCGGc----UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 14982 0.71 0.334986
Target:  5'- uGCGCGG-CcGCGCcGGCCGcgcccggaGCGCGGGa -3'
miRNA:   3'- -CGCGUCaGcCGCGaCCGGC--------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 15380 0.67 0.577076
Target:  5'- gGCGCccUCGGCGCcGccgucgauGCCGACGCGc- -3'
miRNA:   3'- -CGCGucAGCCGCGaC--------CGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 15423 0.68 0.473677
Target:  5'- -aGCccagAGUCGGCcggGCgcgGGCCGGCGaUGGAg -3'
miRNA:   3'- cgCG----UCAGCCG---CGa--CCGGCUGC-GCCU- -5'
23798 3' -62.5 NC_005261.1 + 15511 0.67 0.567392
Target:  5'- gGCGUGuGUCGGCGUgcaGGCaGGaGCGGAa -3'
miRNA:   3'- -CGCGU-CAGCCGCGa--CCGgCUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 15918 0.71 0.32075
Target:  5'- cGCGCAGcCGGgGCcggGGCCGGgGCccGGGc -3'
miRNA:   3'- -CGCGUCaGCCgCGa--CCGGCUgCG--CCU- -5'
23798 3' -62.5 NC_005261.1 + 16165 0.71 0.342275
Target:  5'- aGgGCAGUagggGGCGC-GGgCGugGCGGGg -3'
miRNA:   3'- -CgCGUCAg---CCGCGaCCgGCugCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 17446 0.66 0.624932
Target:  5'- aGCGgGGUUGGggguaggggaaacUGCgGGCaGACGCGGGc -3'
miRNA:   3'- -CGCgUCAGCC-------------GCGaCCGgCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 17551 0.72 0.293651
Target:  5'- gGCGCGGgcccgccguUCGGCGgUGGCCu-UGCGGGc -3'
miRNA:   3'- -CGCGUC---------AGCCGCgACCGGcuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 18375 0.74 0.233785
Target:  5'- cGCGUAGUCGGaggucccaaagcCGCU-GCgGACGCGGGc -3'
miRNA:   3'- -CGCGUCAGCC------------GCGAcCGgCUGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.