miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 132618 0.72 0.287161
Target:  5'- cGC-CAGggGGCGCUGGCgccgagGACGCGGGc -3'
miRNA:   3'- -CGcGUCagCCGCGACCGg-----CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 132562 0.67 0.538613
Target:  5'- gGCGCAGUaCGGCuGCgaagacgucGGCgCGccCGCGGAc -3'
miRNA:   3'- -CGCGUCA-GCCG-CGa--------CCG-GCu-GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 132379 0.69 0.416252
Target:  5'- cGCGCucgCGGCGCUGuuccccgaggccgccGCCGACGCc-- -3'
miRNA:   3'- -CGCGucaGCCGCGAC---------------CGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 131748 0.76 0.171633
Target:  5'- aCGCGGaCGGCacGCcGGCCGGCGCGGc -3'
miRNA:   3'- cGCGUCaGCCG--CGaCCGGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 131692 0.66 0.63572
Target:  5'- uGCGCg--CGGCGCUGGaCCGccucgagagccAgGCGGc -3'
miRNA:   3'- -CGCGucaGCCGCGACC-GGC-----------UgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 131199 0.69 0.438374
Target:  5'- gGCGCGGUcgccgcCGGCGCgcccgcguacgUGGCCG-CGCGc- -3'
miRNA:   3'- -CGCGUCA------GCCGCG-----------ACCGGCuGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 130774 0.71 0.342275
Target:  5'- -aGCAGcuggCGccccGCGCUGGCCGcacCGCGGAc -3'
miRNA:   3'- cgCGUCa---GC----CGCGACCGGCu--GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 130635 0.73 0.239278
Target:  5'- cGCGCGGggcgcgCGuGCGCUcGCCGACGCGc- -3'
miRNA:   3'- -CGCGUCa-----GC-CGCGAcCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 130515 0.73 0.262333
Target:  5'- gGCGCA---GGCGCUGGCCGaaGCGCGc- -3'
miRNA:   3'- -CGCGUcagCCGCGACCGGC--UGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 128783 0.67 0.567392
Target:  5'- cGCGCcguuGUCugGGCGCccgGGCCcGCgGCGGGg -3'
miRNA:   3'- -CGCGu---CAG--CCGCGa--CCGGcUG-CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 128107 0.75 0.184519
Target:  5'- -aGCGGcgCGGCGCggggucgGGCCGAgUGCGGAg -3'
miRNA:   3'- cgCGUCa-GCCGCGa------CCGGCU-GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 127853 0.68 0.491855
Target:  5'- gGgGCGGUcgCGGCGCcagGGCaCGA-GCGGGa -3'
miRNA:   3'- -CgCGUCA--GCCGCGa--CCG-GCUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 127643 0.67 0.55775
Target:  5'- -gGCGG-CGGCGCcgggGGgCG-CGCGGGu -3'
miRNA:   3'- cgCGUCaGCCGCGa---CCgGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 125416 0.71 0.349678
Target:  5'- gGCGCGGgCGGCGCUcaGGCCGcccaucccuaGCGGc -3'
miRNA:   3'- -CGCGUCaGCCGCGA--CCGGCug--------CGCCu -5'
23798 3' -62.5 NC_005261.1 + 124927 0.69 0.429785
Target:  5'- cGCGgAGgcuccgccgCGcGCGCUGuGCCGGCGCccuGGAg -3'
miRNA:   3'- -CGCgUCa--------GC-CGCGAC-CGGCUGCG---CCU- -5'
23798 3' -62.5 NC_005261.1 + 123175 0.66 0.625913
Target:  5'- cGCGCGGgcgUGGUgGCUGGUguGgGCGGAc -3'
miRNA:   3'- -CGCGUCa--GCCG-CGACCGgcUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 122138 0.67 0.548155
Target:  5'- cUGCAGguggUGGUGCacGGCCGACGCc-- -3'
miRNA:   3'- cGCGUCa---GCCGCGa-CCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 121801 0.69 0.438374
Target:  5'- uGgGCAGggGGCGCgUGGCUGGgcucUGCGGGc -3'
miRNA:   3'- -CgCGUCagCCGCG-ACCGGCU----GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 121771 0.67 0.538613
Target:  5'- aGCGCGGUggggUGGcCGC-GGCCGGCG-GGc -3'
miRNA:   3'- -CGCGUCA----GCC-GCGaCCGGCUGCgCCu -5'
23798 3' -62.5 NC_005261.1 + 121175 0.67 0.529129
Target:  5'- gGCGC--UCGGUGCacggGGCCGGgGcCGGGc -3'
miRNA:   3'- -CGCGucAGCCGCGa---CCGGCUgC-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.