miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 138215 0.71 0.342275
Target:  5'- aGgGCGGaCGGCgGCUcGGCCGccGCGCGGu -3'
miRNA:   3'- -CgCGUCaGCCG-CGA-CCGGC--UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 138186 0.66 0.606319
Target:  5'- gGgGgGGagGGCGCgGGCgGGCGgGGGg -3'
miRNA:   3'- -CgCgUCagCCGCGaCCGgCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 138029 0.69 0.412909
Target:  5'- gGCGCGGcccggCGGCGgUGGCggcgGugGCGGc -3'
miRNA:   3'- -CGCGUCa----GCCGCgACCGg---CugCGCCu -5'
23798 3' -62.5 NC_005261.1 + 137845 0.69 0.455841
Target:  5'- gGCGgAGUUGGCGg-GGCUGGCGCc-- -3'
miRNA:   3'- -CGCgUCAGCCGCgaCCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 137065 0.68 0.473677
Target:  5'- gGCGCGGa-GGCGCgGGCacccauggCGGCGCaGGAg -3'
miRNA:   3'- -CGCGUCagCCGCGaCCG--------GCUGCG-CCU- -5'
23798 3' -62.5 NC_005261.1 + 136920 0.67 0.539565
Target:  5'- cGCGCGGccgCGGCGCauguggugguacaugGGCCGcguCGuCGGGc -3'
miRNA:   3'- -CGCGUCa--GCCGCGa--------------CCGGCu--GC-GCCU- -5'
23798 3' -62.5 NC_005261.1 + 136775 0.7 0.369455
Target:  5'- cGUGCAGcgagucggcgaggCGGUGCaGGCCaGugGCGGGc -3'
miRNA:   3'- -CGCGUCa------------GCCGCGaCCGG-CugCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 136602 0.67 0.548155
Target:  5'- gGCGCAGcguggagCGGCGCgcgcGcGCCGAgggcgGCGGGa -3'
miRNA:   3'- -CGCGUCa------GCCGCGa---C-CGGCUg----CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 136564 0.68 0.482725
Target:  5'- gGgGCAGaaGGCGCgggugGGCgGGCGCaGAg -3'
miRNA:   3'- -CgCGUCagCCGCGa----CCGgCUGCGcCU- -5'
23798 3' -62.5 NC_005261.1 + 135214 0.66 0.596545
Target:  5'- nGCGCAGagGGCcacGGCCGAgCGCGu- -3'
miRNA:   3'- -CGCGUCagCCGcgaCCGGCU-GCGCcu -5'
23798 3' -62.5 NC_005261.1 + 135183 0.67 0.529129
Target:  5'- cGCuGCGGcUCGcGCGgagcaUGGCCGAgGCGGc -3'
miRNA:   3'- -CG-CGUC-AGC-CGCg----ACCGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 135032 0.7 0.388378
Target:  5'- cCGCGG-CGGCGa-GGCCGACGCc-- -3'
miRNA:   3'- cGCGUCaGCCGCgaCCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 134973 0.67 0.574166
Target:  5'- aCGCAGaCGGCGaggacggGGCCGccggggcgccccugGCGCGGc -3'
miRNA:   3'- cGCGUCaGCCGCga-----CCGGC--------------UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 134365 0.71 0.357195
Target:  5'- cGCGCGGggggCGGCGCcgcUGGCgaCGGCgagaGCGGGa -3'
miRNA:   3'- -CGCGUCa---GCCGCG---ACCG--GCUG----CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 134199 0.73 0.262333
Target:  5'- gGCGCGGcUCGGCGCgcgGGUCG-CgGCGGc -3'
miRNA:   3'- -CGCGUC-AGCCGCGa--CCGGCuG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 134076 0.7 0.375692
Target:  5'- cGCGCGGcucaugugcgagcucUCGGCGC--GCCGGCGCGc- -3'
miRNA:   3'- -CGCGUC---------------AGCCGCGacCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 133832 0.74 0.228399
Target:  5'- uGCGCGGccgCGuGCGCgccgUGGCCGGCGCGc- -3'
miRNA:   3'- -CGCGUCa--GC-CGCG----ACCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 133707 0.69 0.438374
Target:  5'- uGCGCGacccCGGCGCcgucuacgucgGGgCGGCGCGGAc -3'
miRNA:   3'- -CGCGUca--GCCGCGa----------CCgGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 133345 0.68 0.51035
Target:  5'- cGCGCGcgCGGCGCU-GCCG-CGCaGGGc -3'
miRNA:   3'- -CGCGUcaGCCGCGAcCGGCuGCG-CCU- -5'
23798 3' -62.5 NC_005261.1 + 132941 0.73 0.268372
Target:  5'- aCGUGGUCcccgaGCGCUGcGCCGACGUGGc -3'
miRNA:   3'- cGCGUCAGc----CGCGAC-CGGCUGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.