miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 74893 0.82 0.065919
Target:  5'- gGCGgAGUCGGCggcccgcGCUGGCCG-CGCGGGg -3'
miRNA:   3'- -CGCgUCAGCCG-------CGACCGGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 99469 0.81 0.073247
Target:  5'- cCGCGG-CGGCGCUGGCCGcUGCGGc -3'
miRNA:   3'- cGCGUCaGCCGCGACCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 20570 0.8 0.083244
Target:  5'- uGCGCAG-CGGCGCcGG-CGGCGCGGGu -3'
miRNA:   3'- -CGCGUCaGCCGCGaCCgGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 12316 0.79 0.096962
Target:  5'- cGCGUAGcCGGCGggcgcgcgcUUGGCCGGCGCGGc -3'
miRNA:   3'- -CGCGUCaGCCGC---------GACCGGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 48442 0.79 0.096962
Target:  5'- uCGCGGUgcgUGGCGC-GGCCGGCGCGGu -3'
miRNA:   3'- cGCGUCA---GCCGCGaCCGGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 118382 0.79 0.104598
Target:  5'- cGCGCGGcccgaGGCGCUGGCgGcCGCGGGc -3'
miRNA:   3'- -CGCGUCag---CCGCGACCGgCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 118578 0.78 0.112797
Target:  5'- cGCGCGG-CGGCGCgcgccGCCGcCGCGGAg -3'
miRNA:   3'- -CGCGUCaGCCGCGac---CGGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 34724 0.78 0.121594
Target:  5'- -aGCGGUCGGCGCccccUGGCgGcCGCGGGg -3'
miRNA:   3'- cgCGUCAGCCGCG----ACCGgCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68670 0.78 0.127174
Target:  5'- cGCGCcGcCGGCGUccgccgcgugggGGCCGGCGCGGAc -3'
miRNA:   3'- -CGCGuCaGCCGCGa-----------CCGGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68125 0.78 0.127491
Target:  5'- uGCGCGGgccgCGGCGCggcgaccgcgccgUGGCCGgcuacacgcGCGCGGAg -3'
miRNA:   3'- -CGCGUCa---GCCGCG-------------ACCGGC---------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 45621 0.78 0.127808
Target:  5'- gGCGCGGcgCGGCGCggcgGGCCcGCGcCGGAg -3'
miRNA:   3'- -CGCGUCa-GCCGCGa---CCGGcUGC-GCCU- -5'
23798 3' -62.5 NC_005261.1 + 31652 0.77 0.147889
Target:  5'- gGCGCGGUCGaguaccucugccuGCgGCUGGCCGcgGCGCGGc -3'
miRNA:   3'- -CGCGUCAGC-------------CG-CGACCGGC--UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 31595 0.77 0.147889
Target:  5'- aGCGCGcUCGGCGCgcagGGCgugcugcugcucgCGACGCGGGa -3'
miRNA:   3'- -CGCGUcAGCCGCGa---CCG-------------GCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 75477 0.77 0.148253
Target:  5'- cGgGCGG-CGGCGCgGGCCGcuacgaGCGCGGGg -3'
miRNA:   3'- -CgCGUCaGCCGCGaCCGGC------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 118610 0.76 0.155705
Target:  5'- cGCGCuGUCGGCcguugccCUGGCCGcCGCGGc -3'
miRNA:   3'- -CGCGuCAGCCGc------GACCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 98384 0.76 0.155705
Target:  5'- gGCGCAauacCGGCGUgggGGCgGGCGCGGAc -3'
miRNA:   3'- -CGCGUca--GCCGCGa--CCGgCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 32067 0.76 0.159557
Target:  5'- cGCGCAGagcgCGGCGCUGgggcucggggaGCCGGacuuCGCGGAg -3'
miRNA:   3'- -CGCGUCa---GCCGCGAC-----------CGGCU----GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 3886 0.76 0.171633
Target:  5'- cGCGCAGcUCGGCGa--GCgCGGCGCGGGc -3'
miRNA:   3'- -CGCGUC-AGCCGCgacCG-GCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68281 0.76 0.171633
Target:  5'- cGCGCGG-CGGgGCcccGGCCGcggGCGCGGAc -3'
miRNA:   3'- -CGCGUCaGCCgCGa--CCGGC---UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 131748 0.76 0.171633
Target:  5'- aCGCGGaCGGCacGCcGGCCGGCGCGGc -3'
miRNA:   3'- cGCGUCaGCCG--CGaCCGGCUGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.