miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 90379 0.76 0.173303
Target:  5'- uGCGCGGcgaggccccgccggCGGgGCUGGCgccCGGCGCGGAc -3'
miRNA:   3'- -CGCGUCa-------------GCCgCGACCG---GCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 128107 0.75 0.184519
Target:  5'- -aGCGGcgCGGCGCggggucgGGCCGAgUGCGGAg -3'
miRNA:   3'- cgCGUCa-GCCGCGa------CCGGCU-GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 39462 0.75 0.184519
Target:  5'- cGCGCGGcgCGGCGCcccaacgGGcCCGcCGCGGAc -3'
miRNA:   3'- -CGCGUCa-GCCGCGa------CC-GGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 32321 0.75 0.189001
Target:  5'- cCGCGGccgCGGCGCccggcgUGGCCuggGACGCGGAc -3'
miRNA:   3'- cGCGUCa--GCCGCG------ACCGG---CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 13350 0.75 0.193578
Target:  5'- -aGCGGUCGGCGgaGGCUGG-GCGGc -3'
miRNA:   3'- cgCGUCAGCCGCgaCCGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 108085 0.75 0.193578
Target:  5'- -gGUAGUCGGCGCUGGgcCCGuACGCGu- -3'
miRNA:   3'- cgCGUCAGCCGCGACC--GGC-UGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 3528 0.75 0.203024
Target:  5'- aGCGCGGcggccgccUCGGCGCgcagcgcGGCgGGCGCGGc -3'
miRNA:   3'- -CGCGUC--------AGCCGCGa------CCGgCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 37234 0.75 0.203024
Target:  5'- uGCGCGGcgCGGCGCgUGGaCaGCGCGGAg -3'
miRNA:   3'- -CGCGUCa-GCCGCG-ACCgGcUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 104821 0.75 0.203024
Target:  5'- cCGCAG-CGGCGUcgcggGGCCGcgccACGCGGAc -3'
miRNA:   3'- cGCGUCaGCCGCGa----CCGGC----UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 29679 0.74 0.212867
Target:  5'- cGCGCuGUgGGCGCUGccGCaCGugGCGGc -3'
miRNA:   3'- -CGCGuCAgCCGCGAC--CG-GCugCGCCu -5'
23798 3' -62.5 NC_005261.1 + 21196 0.74 0.217941
Target:  5'- aGCGCGGccgCGGaCGCUGGCCccggccgcGACgGCGGGc -3'
miRNA:   3'- -CGCGUCa--GCC-GCGACCGG--------CUG-CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 12642 0.74 0.217941
Target:  5'- gGCGCGGUCuGGgGCcGcGCCGGCGCGa- -3'
miRNA:   3'- -CGCGUCAG-CCgCGaC-CGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 133832 0.74 0.228399
Target:  5'- uGCGCGGccgCGuGCGCgccgUGGCCGGCGCGc- -3'
miRNA:   3'- -CGCGUCa--GC-CGCG----ACCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 18375 0.74 0.233785
Target:  5'- cGCGUAGUCGGaggucccaaagcCGCU-GCgGACGCGGGc -3'
miRNA:   3'- -CGCGUCAGCC------------GCGAcCGgCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 76461 0.74 0.233785
Target:  5'- gGCGaCGG-CGGCGCcGGCgCGcGCGCGGAc -3'
miRNA:   3'- -CGC-GUCaGCCGCGaCCG-GC-UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 130635 0.73 0.239278
Target:  5'- cGCGCGGggcgcgCGuGCGCUcGCCGACGCGc- -3'
miRNA:   3'- -CGCGUCa-----GC-CGCGAcCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 98745 0.73 0.239278
Target:  5'- cGCGCG---GGCGUUGGCCG-CGCGGu -3'
miRNA:   3'- -CGCGUcagCCGCGACCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 31798 0.73 0.239278
Target:  5'- gGCGCAGUgcgcCGcGCGCUGGCCugagcGGCGCGc- -3'
miRNA:   3'- -CGCGUCA----GC-CGCGACCGG-----CUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 75587 0.73 0.244878
Target:  5'- gGCGCGGcgcUCGcGCGCgccGCgGACGCGGAc -3'
miRNA:   3'- -CGCGUC---AGC-CGCGac-CGgCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 118133 0.73 0.254648
Target:  5'- cGCGCcGcUCGGCcggcucgcgcagacGCUGGCCGuCGCGGc -3'
miRNA:   3'- -CGCGuC-AGCCG--------------CGACCGGCuGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.