miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 1277 0.66 0.625913
Target:  5'- uGUGC---CGGCGCccaGGCCGGCGgGGc -3'
miRNA:   3'- -CGCGucaGCCGCGa--CCGGCUGCgCCu -5'
23798 3' -62.5 NC_005261.1 + 17446 0.66 0.624932
Target:  5'- aGCGgGGUUGGggguaggggaaacUGCgGGCaGACGCGGGc -3'
miRNA:   3'- -CGCgUCAGCC-------------GCGaCCGgCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 89628 0.66 0.621991
Target:  5'- cCGCGG-CGGCGUcuuccgcgucuCCGACGCGGGc -3'
miRNA:   3'- cGCGUCaGCCGCGacc--------GGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 2605 0.66 0.61611
Target:  5'- cCGCcGUCGGCgGCggGGCCGccGgGCGGc -3'
miRNA:   3'- cGCGuCAGCCG-CGa-CCGGC--UgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 107949 0.66 0.61611
Target:  5'- aCGUAGUcCGuGCGCggccgcggGGCCaugcaGugGCGGAu -3'
miRNA:   3'- cGCGUCA-GC-CGCGa-------CCGG-----CugCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 85016 0.66 0.61611
Target:  5'- cGCGgGGUC-GCGC-GGCCGcCGCGc- -3'
miRNA:   3'- -CGCgUCAGcCGCGaCCGGCuGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 1567 0.66 0.610234
Target:  5'- cCGCAG-CGGCGCgccgagcccccagcGGUuggCGGCGCGGu -3'
miRNA:   3'- cGCGUCaGCCGCGa-------------CCG---GCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 111935 0.66 0.606319
Target:  5'- cUGCAGUCGGCGCUGaa-GuACGaGGAg -3'
miRNA:   3'- cGCGUCAGCCGCGACcggC-UGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 515 0.66 0.606319
Target:  5'- gGgGgGGagGGCGCgGGCgGGCGgGGGg -3'
miRNA:   3'- -CgCgUCagCCGCGaCCGgCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 48670 0.66 0.606319
Target:  5'- cGCGCGGcaaCGGCGacuacgGGCC--CGCGGGc -3'
miRNA:   3'- -CGCGUCa--GCCGCga----CCGGcuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 23474 0.66 0.606319
Target:  5'- cCGCGG-CGGCGagugcgcgGGCCcgccugggcaGGCGCGGGc -3'
miRNA:   3'- cGCGUCaGCCGCga------CCGG----------CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 50992 0.66 0.606319
Target:  5'- cCGaCGG-CGGCGCgugGGCgCGGCG-GGAg -3'
miRNA:   3'- cGC-GUCaGCCGCGa--CCG-GCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 50826 0.66 0.606319
Target:  5'- cGCGCGGcUUGGCGCcgcGaGCUGGCGCc-- -3'
miRNA:   3'- -CGCGUC-AGCCGCGa--C-CGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 117695 0.66 0.606319
Target:  5'- gGCGaGGcCGGCcCUgaGGCCGGCGCGcGGg -3'
miRNA:   3'- -CGCgUCaGCCGcGA--CCGGCUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 68330 0.66 0.606319
Target:  5'- cGUGcCGGUCGGCGaccccuacCUGGCCGAgUGCu-- -3'
miRNA:   3'- -CGC-GUCAGCCGC--------GACCGGCU-GCGccu -5'
23798 3' -62.5 NC_005261.1 + 138186 0.66 0.606319
Target:  5'- gGgGgGGagGGCGCgGGCgGGCGgGGGg -3'
miRNA:   3'- -CgCgUCagCCGCGaCCGgCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 58278 0.66 0.606319
Target:  5'- cGCGCucacggGGcCGGCGCgccGGggGGCGCGGGg -3'
miRNA:   3'- -CGCG------UCaGCCGCGa--CCggCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 91703 0.66 0.606319
Target:  5'- uGCGaCAGcCGGCuGCaaGGCCGGCucgccgcgGCGGGc -3'
miRNA:   3'- -CGC-GUCaGCCG-CGa-CCGGCUG--------CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 110215 0.66 0.596545
Target:  5'- gGCGCAaccUCGGCGaCgccuccagcgUGGgCGGCGCGGc -3'
miRNA:   3'- -CGCGUc--AGCCGC-G----------ACCgGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 102331 0.66 0.596545
Target:  5'- cGCGCAGcCGcGCcaGCUcGGCCGcgucgaAgGCGGAg -3'
miRNA:   3'- -CGCGUCaGC-CG--CGA-CCGGC------UgCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.