miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 57848 0.73 0.260543
Target:  5'- gGCGCGGgcggcaaggccUCGGCGCUcgggucgggaagucGGCCGGCaCGGGg -3'
miRNA:   3'- -CGCGUC-----------AGCCGCGA--------------CCGGCUGcGCCU- -5'
23798 3' -62.5 NC_005261.1 + 134199 0.73 0.262333
Target:  5'- gGCGCGGcUCGGCGCgcgGGUCG-CgGCGGc -3'
miRNA:   3'- -CGCGUC-AGCCGCGa--CCGGCuG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 130515 0.73 0.262333
Target:  5'- gGCGCA---GGCGCUGGCCGaaGCGCGc- -3'
miRNA:   3'- -CGCGUcagCCGCGACCGGC--UGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 92318 0.73 0.262333
Target:  5'- cGCGCGGUCcGCGC-GGCCcaucCGCGGGc -3'
miRNA:   3'- -CGCGUCAGcCGCGaCCGGcu--GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 101445 0.73 0.268372
Target:  5'- gGCGCGGUCcaGCGCUGGCCccagcgccgccGGCgGCGGc -3'
miRNA:   3'- -CGCGUCAGc-CGCGACCGG-----------CUG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 48050 0.73 0.268372
Target:  5'- cGCGCGGUCGGgGCccgcGGCCcACGCcGAg -3'
miRNA:   3'- -CGCGUCAGCCgCGa---CCGGcUGCGcCU- -5'
23798 3' -62.5 NC_005261.1 + 98902 0.73 0.268372
Target:  5'- cGCGCgugaacagcgGGUCGGCGg-GGUCGGCuGCGGGg -3'
miRNA:   3'- -CGCG----------UCAGCCGCgaCCGGCUG-CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 132941 0.73 0.268372
Target:  5'- aCGUGGUCcccgaGCGCUGcGCCGACGUGGc -3'
miRNA:   3'- cGCGUCAGc----CGCGAC-CGGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 96337 0.72 0.277014
Target:  5'- gGCGCGGcCGcGCGCaccugacgcccugacUGGCCuGGCGCGGc -3'
miRNA:   3'- -CGCGUCaGC-CGCG---------------ACCGG-CUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 98329 0.72 0.280785
Target:  5'- -aGCGG-CGGCGCgccccGuGUCGACGCGGGg -3'
miRNA:   3'- cgCGUCaGCCGCGa----C-CGGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 79823 0.72 0.280785
Target:  5'- cGCGCGG-CGGCGCggcGGCCaGCGCa-- -3'
miRNA:   3'- -CGCGUCaGCCGCGa--CCGGcUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 32527 0.72 0.285237
Target:  5'- cGCGCccggccccggccccGGccgCGGCGCgGGCCGGCGCGc- -3'
miRNA:   3'- -CGCG--------------UCa--GCCGCGaCCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 132618 0.72 0.287161
Target:  5'- cGC-CAGggGGCGCUGGCgccgagGACGCGGGc -3'
miRNA:   3'- -CGcGUCagCCGCGACCGg-----CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 2674 0.72 0.287161
Target:  5'- cGCGCuGgggacccggCGGCGCgccggcuuuUGGCCGGCGcCGGGc -3'
miRNA:   3'- -CGCGuCa--------GCCGCG---------ACCGGCUGC-GCCU- -5'
23798 3' -62.5 NC_005261.1 + 74690 0.72 0.293651
Target:  5'- cGCGCGGga---GCUGGCCGccGCGCGGGc -3'
miRNA:   3'- -CGCGUCagccgCGACCGGC--UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 92596 0.72 0.293651
Target:  5'- aGCGCAGccgcucgCGGCGCgugccggGGCCccgGGCGCGaGAg -3'
miRNA:   3'- -CGCGUCa------GCCGCGa------CCGG---CUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 1183 0.72 0.293651
Target:  5'- cCGCGGcCGGgGCcggGGCCGggcgcgGCGCGGAc -3'
miRNA:   3'- cGCGUCaGCCgCGa--CCGGC------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 17551 0.72 0.293651
Target:  5'- gGCGCGGgcccgccguUCGGCGgUGGCCu-UGCGGGc -3'
miRNA:   3'- -CGCGUC---------AGCCGCgACCGGcuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 22735 0.72 0.300254
Target:  5'- aGCGcCAGUCGGgCGCgGGgCGGCgGCGGc -3'
miRNA:   3'- -CGC-GUCAGCC-GCGaCCgGCUG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 34911 0.72 0.306972
Target:  5'- cGCGgaGGUCGGgGCgcGGCC-ACGCGGGg -3'
miRNA:   3'- -CGCg-UCAGCCgCGa-CCGGcUGCGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.