Results 41 - 60 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23798 | 3' | -62.5 | NC_005261.1 | + | 57848 | 0.73 | 0.260543 |
Target: 5'- gGCGCGGgcggcaaggccUCGGCGCUcgggucgggaagucGGCCGGCaCGGGg -3' miRNA: 3'- -CGCGUC-----------AGCCGCGA--------------CCGGCUGcGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 134199 | 0.73 | 0.262333 |
Target: 5'- gGCGCGGcUCGGCGCgcgGGUCG-CgGCGGc -3' miRNA: 3'- -CGCGUC-AGCCGCGa--CCGGCuG-CGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 130515 | 0.73 | 0.262333 |
Target: 5'- gGCGCA---GGCGCUGGCCGaaGCGCGc- -3' miRNA: 3'- -CGCGUcagCCGCGACCGGC--UGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 92318 | 0.73 | 0.262333 |
Target: 5'- cGCGCGGUCcGCGC-GGCCcaucCGCGGGc -3' miRNA: 3'- -CGCGUCAGcCGCGaCCGGcu--GCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 101445 | 0.73 | 0.268372 |
Target: 5'- gGCGCGGUCcaGCGCUGGCCccagcgccgccGGCgGCGGc -3' miRNA: 3'- -CGCGUCAGc-CGCGACCGG-----------CUG-CGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 48050 | 0.73 | 0.268372 |
Target: 5'- cGCGCGGUCGGgGCccgcGGCCcACGCcGAg -3' miRNA: 3'- -CGCGUCAGCCgCGa---CCGGcUGCGcCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 98902 | 0.73 | 0.268372 |
Target: 5'- cGCGCgugaacagcgGGUCGGCGg-GGUCGGCuGCGGGg -3' miRNA: 3'- -CGCG----------UCAGCCGCgaCCGGCUG-CGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 132941 | 0.73 | 0.268372 |
Target: 5'- aCGUGGUCcccgaGCGCUGcGCCGACGUGGc -3' miRNA: 3'- cGCGUCAGc----CGCGAC-CGGCUGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 96337 | 0.72 | 0.277014 |
Target: 5'- gGCGCGGcCGcGCGCaccugacgcccugacUGGCCuGGCGCGGc -3' miRNA: 3'- -CGCGUCaGC-CGCG---------------ACCGG-CUGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 98329 | 0.72 | 0.280785 |
Target: 5'- -aGCGG-CGGCGCgccccGuGUCGACGCGGGg -3' miRNA: 3'- cgCGUCaGCCGCGa----C-CGGCUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 79823 | 0.72 | 0.280785 |
Target: 5'- cGCGCGG-CGGCGCggcGGCCaGCGCa-- -3' miRNA: 3'- -CGCGUCaGCCGCGa--CCGGcUGCGccu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 32527 | 0.72 | 0.285237 |
Target: 5'- cGCGCccggccccggccccGGccgCGGCGCgGGCCGGCGCGc- -3' miRNA: 3'- -CGCG--------------UCa--GCCGCGaCCGGCUGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 132618 | 0.72 | 0.287161 |
Target: 5'- cGC-CAGggGGCGCUGGCgccgagGACGCGGGc -3' miRNA: 3'- -CGcGUCagCCGCGACCGg-----CUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 2674 | 0.72 | 0.287161 |
Target: 5'- cGCGCuGgggacccggCGGCGCgccggcuuuUGGCCGGCGcCGGGc -3' miRNA: 3'- -CGCGuCa--------GCCGCG---------ACCGGCUGC-GCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 74690 | 0.72 | 0.293651 |
Target: 5'- cGCGCGGga---GCUGGCCGccGCGCGGGc -3' miRNA: 3'- -CGCGUCagccgCGACCGGC--UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 92596 | 0.72 | 0.293651 |
Target: 5'- aGCGCAGccgcucgCGGCGCgugccggGGCCccgGGCGCGaGAg -3' miRNA: 3'- -CGCGUCa------GCCGCGa------CCGG---CUGCGC-CU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 1183 | 0.72 | 0.293651 |
Target: 5'- cCGCGGcCGGgGCcggGGCCGggcgcgGCGCGGAc -3' miRNA: 3'- cGCGUCaGCCgCGa--CCGGC------UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 17551 | 0.72 | 0.293651 |
Target: 5'- gGCGCGGgcccgccguUCGGCGgUGGCCu-UGCGGGc -3' miRNA: 3'- -CGCGUC---------AGCCGCgACCGGcuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 22735 | 0.72 | 0.300254 |
Target: 5'- aGCGcCAGUCGGgCGCgGGgCGGCgGCGGc -3' miRNA: 3'- -CGC-GUCAGCC-GCGaCCgGCUG-CGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 34911 | 0.72 | 0.306972 |
Target: 5'- cGCGgaGGUCGGgGCgcGGCC-ACGCGGGg -3' miRNA: 3'- -CGCg-UCAGCCgCGa-CCGGcUGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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