miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 68125 0.78 0.127491
Target:  5'- uGCGCGGgccgCGGCGCggcgaccgcgccgUGGCCGgcuacacgcGCGCGGAg -3'
miRNA:   3'- -CGCGUCa---GCCGCG-------------ACCGGC---------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 45621 0.78 0.127808
Target:  5'- gGCGCGGcgCGGCGCggcgGGCCcGCGcCGGAg -3'
miRNA:   3'- -CGCGUCa-GCCGCGa---CCGGcUGC-GCCU- -5'
23798 3' -62.5 NC_005261.1 + 31652 0.77 0.147889
Target:  5'- gGCGCGGUCGaguaccucugccuGCgGCUGGCCGcgGCGCGGc -3'
miRNA:   3'- -CGCGUCAGC-------------CG-CGACCGGC--UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 31595 0.77 0.147889
Target:  5'- aGCGCGcUCGGCGCgcagGGCgugcugcugcucgCGACGCGGGa -3'
miRNA:   3'- -CGCGUcAGCCGCGa---CCG-------------GCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 75477 0.77 0.148253
Target:  5'- cGgGCGG-CGGCGCgGGCCGcuacgaGCGCGGGg -3'
miRNA:   3'- -CgCGUCaGCCGCGaCCGGC------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 118610 0.76 0.155705
Target:  5'- cGCGCuGUCGGCcguugccCUGGCCGcCGCGGc -3'
miRNA:   3'- -CGCGuCAGCCGc------GACCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 74893 0.82 0.065919
Target:  5'- gGCGgAGUCGGCggcccgcGCUGGCCG-CGCGGGg -3'
miRNA:   3'- -CGCgUCAGCCG-------CGACCGGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 32067 0.76 0.159557
Target:  5'- cGCGCAGagcgCGGCGCUGgggcucggggaGCCGGacuuCGCGGAg -3'
miRNA:   3'- -CGCGUCa---GCCGCGAC-----------CGGCU----GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 3886 0.76 0.171633
Target:  5'- cGCGCAGcUCGGCGa--GCgCGGCGCGGGc -3'
miRNA:   3'- -CGCGUC-AGCCGCgacCG-GCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 68281 0.76 0.171633
Target:  5'- cGCGCGG-CGGgGCcccGGCCGcggGCGCGGAc -3'
miRNA:   3'- -CGCGUCaGCCgCGa--CCGGC---UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 131748 0.76 0.171633
Target:  5'- aCGCGGaCGGCacGCcGGCCGGCGCGGc -3'
miRNA:   3'- cGCGUCaGCCG--CGaCCGGCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 90379 0.76 0.173303
Target:  5'- uGCGCGGcgaggccccgccggCGGgGCUGGCgccCGGCGCGGAc -3'
miRNA:   3'- -CGCGUCa-------------GCCgCGACCG---GCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 128107 0.75 0.184519
Target:  5'- -aGCGGcgCGGCGCggggucgGGCCGAgUGCGGAg -3'
miRNA:   3'- cgCGUCa-GCCGCGa------CCGGCU-GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 39462 0.75 0.184519
Target:  5'- cGCGCGGcgCGGCGCcccaacgGGcCCGcCGCGGAc -3'
miRNA:   3'- -CGCGUCa-GCCGCGa------CC-GGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 32321 0.75 0.189001
Target:  5'- cCGCGGccgCGGCGCccggcgUGGCCuggGACGCGGAc -3'
miRNA:   3'- cGCGUCa--GCCGCG------ACCGG---CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 13350 0.75 0.193578
Target:  5'- -aGCGGUCGGCGgaGGCUGG-GCGGc -3'
miRNA:   3'- cgCGUCAGCCGCgaCCGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 108085 0.75 0.193578
Target:  5'- -gGUAGUCGGCGCUGGgcCCGuACGCGu- -3'
miRNA:   3'- cgCGUCAGCCGCGACC--GGC-UGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 104821 0.75 0.203024
Target:  5'- cCGCAG-CGGCGUcgcggGGCCGcgccACGCGGAc -3'
miRNA:   3'- cGCGUCaGCCGCGa----CCGGC----UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 37234 0.75 0.203024
Target:  5'- uGCGCGGcgCGGCGCgUGGaCaGCGCGGAg -3'
miRNA:   3'- -CGCGUCa-GCCGCG-ACCgGcUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 3528 0.75 0.203024
Target:  5'- aGCGCGGcggccgccUCGGCGCgcagcgcGGCgGGCGCGGc -3'
miRNA:   3'- -CGCGUC--------AGCCGCGa------CCGgCUGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.