Results 41 - 60 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23798 | 3' | -62.5 | NC_005261.1 | + | 68125 | 0.78 | 0.127491 |
Target: 5'- uGCGCGGgccgCGGCGCggcgaccgcgccgUGGCCGgcuacacgcGCGCGGAg -3' miRNA: 3'- -CGCGUCa---GCCGCG-------------ACCGGC---------UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 45621 | 0.78 | 0.127808 |
Target: 5'- gGCGCGGcgCGGCGCggcgGGCCcGCGcCGGAg -3' miRNA: 3'- -CGCGUCa-GCCGCGa---CCGGcUGC-GCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 31652 | 0.77 | 0.147889 |
Target: 5'- gGCGCGGUCGaguaccucugccuGCgGCUGGCCGcgGCGCGGc -3' miRNA: 3'- -CGCGUCAGC-------------CG-CGACCGGC--UGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 31595 | 0.77 | 0.147889 |
Target: 5'- aGCGCGcUCGGCGCgcagGGCgugcugcugcucgCGACGCGGGa -3' miRNA: 3'- -CGCGUcAGCCGCGa---CCG-------------GCUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 75477 | 0.77 | 0.148253 |
Target: 5'- cGgGCGG-CGGCGCgGGCCGcuacgaGCGCGGGg -3' miRNA: 3'- -CgCGUCaGCCGCGaCCGGC------UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 118610 | 0.76 | 0.155705 |
Target: 5'- cGCGCuGUCGGCcguugccCUGGCCGcCGCGGc -3' miRNA: 3'- -CGCGuCAGCCGc------GACCGGCuGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 74893 | 0.82 | 0.065919 |
Target: 5'- gGCGgAGUCGGCggcccgcGCUGGCCG-CGCGGGg -3' miRNA: 3'- -CGCgUCAGCCG-------CGACCGGCuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 32067 | 0.76 | 0.159557 |
Target: 5'- cGCGCAGagcgCGGCGCUGgggcucggggaGCCGGacuuCGCGGAg -3' miRNA: 3'- -CGCGUCa---GCCGCGAC-----------CGGCU----GCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 3886 | 0.76 | 0.171633 |
Target: 5'- cGCGCAGcUCGGCGa--GCgCGGCGCGGGc -3' miRNA: 3'- -CGCGUC-AGCCGCgacCG-GCUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 68281 | 0.76 | 0.171633 |
Target: 5'- cGCGCGG-CGGgGCcccGGCCGcggGCGCGGAc -3' miRNA: 3'- -CGCGUCaGCCgCGa--CCGGC---UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 131748 | 0.76 | 0.171633 |
Target: 5'- aCGCGGaCGGCacGCcGGCCGGCGCGGc -3' miRNA: 3'- cGCGUCaGCCG--CGaCCGGCUGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 90379 | 0.76 | 0.173303 |
Target: 5'- uGCGCGGcgaggccccgccggCGGgGCUGGCgccCGGCGCGGAc -3' miRNA: 3'- -CGCGUCa-------------GCCgCGACCG---GCUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 128107 | 0.75 | 0.184519 |
Target: 5'- -aGCGGcgCGGCGCggggucgGGCCGAgUGCGGAg -3' miRNA: 3'- cgCGUCa-GCCGCGa------CCGGCU-GCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 39462 | 0.75 | 0.184519 |
Target: 5'- cGCGCGGcgCGGCGCcccaacgGGcCCGcCGCGGAc -3' miRNA: 3'- -CGCGUCa-GCCGCGa------CC-GGCuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 32321 | 0.75 | 0.189001 |
Target: 5'- cCGCGGccgCGGCGCccggcgUGGCCuggGACGCGGAc -3' miRNA: 3'- cGCGUCa--GCCGCG------ACCGG---CUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 13350 | 0.75 | 0.193578 |
Target: 5'- -aGCGGUCGGCGgaGGCUGG-GCGGc -3' miRNA: 3'- cgCGUCAGCCGCgaCCGGCUgCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 108085 | 0.75 | 0.193578 |
Target: 5'- -gGUAGUCGGCGCUGGgcCCGuACGCGu- -3' miRNA: 3'- cgCGUCAGCCGCGACC--GGC-UGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 104821 | 0.75 | 0.203024 |
Target: 5'- cCGCAG-CGGCGUcgcggGGCCGcgccACGCGGAc -3' miRNA: 3'- cGCGUCaGCCGCGa----CCGGC----UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 37234 | 0.75 | 0.203024 |
Target: 5'- uGCGCGGcgCGGCGCgUGGaCaGCGCGGAg -3' miRNA: 3'- -CGCGUCa-GCCGCG-ACCgGcUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 3528 | 0.75 | 0.203024 |
Target: 5'- aGCGCGGcggccgccUCGGCGCgcagcgcGGCgGGCGCGGc -3' miRNA: 3'- -CGCGUC--------AGCCGCGa------CCGgCUGCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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