miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 18704 0.67 0.573197
Target:  5'- gGCGCAcGUCGGCGaagcagagaucGUCgGGCGCGGGg -3'
miRNA:   3'- -CGCGU-CAGCCGCgac--------CGG-CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 19071 0.66 0.63572
Target:  5'- uGCGCGGcucUCGGCGC-GuGCUuGCGUGGc -3'
miRNA:   3'- -CGCGUC---AGCCGCGaC-CGGcUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 20570 0.8 0.083244
Target:  5'- uGCGCAG-CGGCGCcGG-CGGCGCGGGu -3'
miRNA:   3'- -CGCGUCaGCCGCGaCCgGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 21196 0.74 0.217941
Target:  5'- aGCGCGGccgCGGaCGCUGGCCccggccgcGACgGCGGGc -3'
miRNA:   3'- -CGCGUCa--GCC-GCGACCGG--------CUG-CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 22654 0.68 0.473677
Target:  5'- cGCGCuGgCGGCGcCUGGgCGGCGCc-- -3'
miRNA:   3'- -CGCGuCaGCCGC-GACCgGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 22735 0.72 0.300254
Target:  5'- aGCGcCAGUCGGgCGCgGGgCGGCgGCGGc -3'
miRNA:   3'- -CGC-GUCAGCC-GCGaCCgGCUG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 23474 0.66 0.606319
Target:  5'- cCGCGG-CGGCGagugcgcgGGCCcgccugggcaGGCGCGGGc -3'
miRNA:   3'- cGCGUCaGCCGCga------CCGG----------CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 23561 0.67 0.538613
Target:  5'- uCGCAGguggGGCaggGCUGGCCGugGCu-- -3'
miRNA:   3'- cGCGUCag--CCG---CGACCGGCugCGccu -5'
23798 3' -62.5 NC_005261.1 + 27360 0.68 0.500141
Target:  5'- gGCGCcGgacCGGCGCgaGGCCGgugggcaggggguACGCGGc -3'
miRNA:   3'- -CGCGuCa--GCCGCGa-CCGGC-------------UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 28618 0.67 0.577076
Target:  5'- gGCGgAGcugUGGCGCaUGGUgGcCGCGGGg -3'
miRNA:   3'- -CGCgUCa--GCCGCG-ACCGgCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 28761 0.7 0.380417
Target:  5'- cCGCGGcCgggGGCGCcugGGCCGcgGCGCGGGc -3'
miRNA:   3'- cGCGUCaG---CCGCGa--CCGGC--UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 29230 0.69 0.455841
Target:  5'- cGCGCAGgcuacgccgCGGCGCcgcgcgacgGGCCGcCGCcgcuGGAg -3'
miRNA:   3'- -CGCGUCa--------GCCGCGa--------CCGGCuGCG----CCU- -5'
23798 3' -62.5 NC_005261.1 + 29474 0.69 0.44706
Target:  5'- -aGCAGUacgCGGCGCUGGUgGACcUGGu -3'
miRNA:   3'- cgCGUCA---GCCGCGACCGgCUGcGCCu -5'
23798 3' -62.5 NC_005261.1 + 29679 0.74 0.212867
Target:  5'- cGCGCuGUgGGCGCUGccGCaCGugGCGGc -3'
miRNA:   3'- -CGCGuCAgCCGCGAC--CG-GCugCGCCu -5'
23798 3' -62.5 NC_005261.1 + 29781 0.67 0.561602
Target:  5'- cGCGCccauggccuacccggAGgcCGGCGCcGG-CGGCGCGGGc -3'
miRNA:   3'- -CGCG---------------UCa-GCCGCGaCCgGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 29912 0.67 0.576105
Target:  5'- cGCGCgAG-CGGCugcgcgaGCUGGCgGACGCu-- -3'
miRNA:   3'- -CGCG-UCaGCCG-------CGACCGgCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 29975 0.68 0.472776
Target:  5'- gGCGCGGUgcgccgcCGGCGCguccGGCagCGGCGCGu- -3'
miRNA:   3'- -CGCGUCA-------GCCGCGa---CCG--GCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 30108 0.68 0.51035
Target:  5'- cGgGCAGcugagcugcUUGGCGC-GGCCcgcGACGCGGu -3'
miRNA:   3'- -CgCGUC---------AGCCGCGaCCGG---CUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 30218 0.7 0.372565
Target:  5'- cGCGCuGgCGGCGCgaaccgUGGCCccgcuGGCGCGGu -3'
miRNA:   3'- -CGCGuCaGCCGCG------ACCGG-----CUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 30350 0.7 0.364056
Target:  5'- cGCGCucgcggcccugaaGGcCGGCGCgccgGGCgccgCGGCGCGGGu -3'
miRNA:   3'- -CGCG-------------UCaGCCGCGa---CCG----GCUGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.