miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 162 0.69 0.455841
Target:  5'- gGCGgAGUUGGCGg-GGCUGGCGCc-- -3'
miRNA:   3'- -CGCgUCAGCCGCgaCCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 358 0.69 0.412909
Target:  5'- gGCGCGGcccggCGGCGgUGGCggcgGugGCGGc -3'
miRNA:   3'- -CGCGUCa----GCCGCgACCGg---CugCGCCu -5'
23798 3' -62.5 NC_005261.1 + 515 0.66 0.606319
Target:  5'- gGgGgGGagGGCGCgGGCgGGCGgGGGg -3'
miRNA:   3'- -CgCgUCagCCGCGaCCGgCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 544 0.71 0.342275
Target:  5'- aGgGCGGaCGGCgGCUcGGCCGccGCGCGGu -3'
miRNA:   3'- -CgCGUCaGCCG-CGA-CCGGC--UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 1048 0.67 0.548155
Target:  5'- cGgGCGG-CGGCGUUaG-CGGCGCGGGg -3'
miRNA:   3'- -CgCGUCaGCCGCGAcCgGCUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 1183 0.72 0.293651
Target:  5'- cCGCGGcCGGgGCcggGGCCGggcgcgGCGCGGAc -3'
miRNA:   3'- cGCGUCaGCCgCGa--CCGGC------UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 1277 0.66 0.625913
Target:  5'- uGUGC---CGGCGCccaGGCCGGCGgGGc -3'
miRNA:   3'- -CGCGucaGCCGCGa--CCGGCUGCgCCu -5'
23798 3' -62.5 NC_005261.1 + 1567 0.66 0.610234
Target:  5'- cCGCAG-CGGCGCgccgagcccccagcGGUuggCGGCGCGGu -3'
miRNA:   3'- cGCGUCaGCCGCGa-------------CCG---GCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 1719 0.67 0.571261
Target:  5'- cGCGCGGcggcacgggcaccgCGGUGCgcgGGCCcaGGCGCGuGGc -3'
miRNA:   3'- -CGCGUCa-------------GCCGCGa--CCGG--CUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 2382 0.67 0.556789
Target:  5'- cCGCAG-CGGCGCgcUGGCggCGAgcgcgccCGCGGGc -3'
miRNA:   3'- cGCGUCaGCCGCG--ACCG--GCU-------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 2548 0.69 0.412909
Target:  5'- aGCGCcG-CGGCGCUGG---GCGCGGGc -3'
miRNA:   3'- -CGCGuCaGCCGCGACCggcUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 2605 0.66 0.61611
Target:  5'- cCGCcGUCGGCgGCggGGCCGccGgGCGGc -3'
miRNA:   3'- cGCGuCAGCCG-CGa-CCGGC--UgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 2674 0.72 0.287161
Target:  5'- cGCGCuGgggacccggCGGCGCgccggcuuuUGGCCGGCGcCGGGc -3'
miRNA:   3'- -CGCGuCa--------GCCGCG---------ACCGGCUGC-GCCU- -5'
23798 3' -62.5 NC_005261.1 + 2744 0.66 0.596545
Target:  5'- uGCGCcG-CGGCG--GGCCGuCGCGGc -3'
miRNA:   3'- -CGCGuCaGCCGCgaCCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 3346 0.67 0.536712
Target:  5'- cCGCGGcgccCGGCGCgccggccuucagGGCCGcgaGCGCGGc -3'
miRNA:   3'- cGCGUCa---GCCGCGa-----------CCGGC---UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 3428 0.66 0.593617
Target:  5'- cGCGCGGgccagcguccaggcgGGCGCgcgGGCCGcCGCGc- -3'
miRNA:   3'- -CGCGUCag-------------CCGCGa--CCGGCuGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 3528 0.75 0.203024
Target:  5'- aGCGCGGcggccgccUCGGCGCgcagcgcGGCgGGCGCGGc -3'
miRNA:   3'- -CGCGUC--------AGCCGCGa------CCGgCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 3808 0.66 0.625913
Target:  5'- cGCGCAGccgcUCGcGCGCUGccGCgGGCcCGGGc -3'
miRNA:   3'- -CGCGUC----AGC-CGCGAC--CGgCUGcGCCU- -5'
23798 3' -62.5 NC_005261.1 + 3846 0.69 0.412909
Target:  5'- gGCgGCAG-CGGCGCcgGcGCCG-CGCGGc -3'
miRNA:   3'- -CG-CGUCaGCCGCGa-C-CGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 3886 0.76 0.171633
Target:  5'- cGCGCAGcUCGGCGa--GCgCGGCGCGGGc -3'
miRNA:   3'- -CGCGUC-AGCCGCgacCG-GCUGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.