miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 97210 0.66 0.933572
Target:  5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 70558 0.75 0.477012
Target:  5'- cGCCGCAgggcGCCgcgaagagcUCGGGCGCGAgcgcAGCGGc -3'
miRNA:   3'- -CGGUGU----CGGa--------AGCCCGCGCUa---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 119879 0.75 0.486571
Target:  5'- cGCCGCAGCCga-GGGCGUGuacaccUGGCGc -3'
miRNA:   3'- -CGGUGUCGGaagCCCGCGCu-----AUUGCu -5'
23800 5' -55.1 NC_005261.1 + 35930 0.74 0.49622
Target:  5'- cGCCGCAGCCcagCGGGCGCccaggccCGAg -3'
miRNA:   3'- -CGGUGUCGGaa-GCCCGCGcuauu--GCU- -5'
23800 5' -55.1 NC_005261.1 + 93828 0.74 0.49622
Target:  5'- cGCCGCAGCCgcCGGGCgGCGccgcCGAg -3'
miRNA:   3'- -CGGUGUCGGaaGCCCG-CGCuauuGCU- -5'
23800 5' -55.1 NC_005261.1 + 43143 0.74 0.503025
Target:  5'- cGCgCGCGGCCUgcgcgccgccgacaUCGcGGCGCGAUAcggcgccgccgGCGAg -3'
miRNA:   3'- -CG-GUGUCGGA--------------AGC-CCGCGCUAU-----------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 111420 0.74 0.505954
Target:  5'- gGCCACAcGCCggCGGGCaaGAgacgGACGAc -3'
miRNA:   3'- -CGGUGU-CGGaaGCCCGcgCUa---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 48699 0.74 0.515769
Target:  5'- gGCCAuCAcGCCggCGGGCGUGAUGuugcaACGGg -3'
miRNA:   3'- -CGGU-GU-CGGaaGCCCGCGCUAU-----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 126944 0.74 0.535622
Target:  5'- gGCCAgGGgCgcCGGGCGCGggGGCGGc -3'
miRNA:   3'- -CGGUgUCgGaaGCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 89090 0.75 0.477012
Target:  5'- gGCUGCGGCC--CGGGCGCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGaaGCCCGCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 96964 0.75 0.477012
Target:  5'- --gGCAGCCgcCGGGCGCGAUucacGCGGc -3'
miRNA:   3'- cggUGUCGGaaGCCCGCGCUAu---UGCU- -5'
23800 5' -55.1 NC_005261.1 + 68981 0.75 0.467547
Target:  5'- aCCGCGGCCcuuUUCGGGCcGCGcgGGCGc -3'
miRNA:   3'- cGGUGUCGG---AAGCCCG-CGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 92617 0.8 0.268385
Target:  5'- uGCCGgGGCCc-CGGGCGCGAgAGCGGg -3'
miRNA:   3'- -CGGUgUCGGaaGCCCGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 4852 0.78 0.323723
Target:  5'- cGCCGCAGCCUcaaGGGCgGCGGccACGAc -3'
miRNA:   3'- -CGGUGUCGGAag-CCCG-CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 14362 0.77 0.387128
Target:  5'- aGCCGCGGCCgggGcGGCGCGGUGGCc- -3'
miRNA:   3'- -CGGUGUCGGaagC-CCGCGCUAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 108186 0.76 0.395608
Target:  5'- gGCCGCGGCUc-CGGGCGCGAgAGCu- -3'
miRNA:   3'- -CGGUGUCGGaaGCCCGCGCUaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 1181 0.76 0.402477
Target:  5'- cGCCGCGGCCggggccggggcCGGGCGCGGc-GCGGa -3'
miRNA:   3'- -CGGUGUCGGaa---------GCCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 81195 0.76 0.404206
Target:  5'- gGgCACGGCCgcgCGGGCGCGAgc-CGGa -3'
miRNA:   3'- -CgGUGUCGGaa-GCCCGCGCUauuGCU- -5'
23800 5' -55.1 NC_005261.1 + 135241 0.76 0.421754
Target:  5'- cGCCGCcGUCUuugCGGGCGCGcgGAUGGa -3'
miRNA:   3'- -CGGUGuCGGAa--GCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 28218 0.76 0.428003
Target:  5'- uGCCGCGGCCccagcuaccccccggCGcGCGCGAUAGCGGg -3'
miRNA:   3'- -CGGUGUCGGaa-------------GCcCGCGCUAUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.